Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq5025 150 2e-31 seq1910 105 8e-18 seq6788 102 1e-16 >seq5025 Length=34140 Score = 150 bits (166), Expect = 2e-31 Identities = 230/325 (71%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| | | | || || || || ||||| || ||||| | || | || || Sbjct 14216 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCTTT 14157 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 14156 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 14097 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 |||||||||||| | ||| ||||||| | |||||| || |||||| |||||||| || Sbjct 14096 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCGGT 14038 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || ||||| | | | | || ||| | || |||| ||||| || || | || Sbjct 14037 TTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCACA 13978 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 |||||| ||| || ||||| ||| | || || || |||| |||||| || || || || Sbjct 13977 AGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACATGG 13918 Query 183492 TGCCTTTGCTCTCATTGGTTTCATG 183516 || ||||| || || ||||||||| Sbjct 13917 GGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| | | | || || || || ||||| || ||||| || || |||| || Sbjct 8353 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCTTT 8412 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 8413 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 8472 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 |||||||||||| | ||| ||||||| | |||||| || |||||| |||||||| || Sbjct 8473 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCGGT 8531 Query 183372 CTCGACGCCTGC 183383 || || ||||| Sbjct 8532 TTCCACCCCTGC 8543 >seq6788 Length=15930 Score = 102 bits (112), Expect = 1e-16 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||| | ||| | || ||| | |||||||| || |||| ||||||||||| || Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || | ||| | |||| | || || || || | || ||| | || || || Sbjct 6606 ATGATCCCTACCTTATTGACCGCAA-CTTCCGTATTTATTATCGCCTTCATCGCTGCTCC 6548 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || ||||| || ||||| || || || || ||||||| | | ||||| ||||| Sbjct 6547 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 6488 Query 181973 CATCATCTCTGGT 181985 || ||||||||| Sbjct 6487 TATTATCTCTGGT 6475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611589847805400