Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq5025 168 8e-37 seq6788 125 8e-24 seq1910 104 3e-17 seq4399 95.1 1e-14 >seq5025 Length=34140 Score = 168 bits (186), Expect = 8e-37 Identities = 235/326 (72%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||||| | | | || |||||||||||||| || ||||| | || | || || Sbjct 14216 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCTTT 14157 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||||||||| || || |||| Sbjct 14156 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 14097 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 166350 ||||| |||||| | || || ||| |||| ||| |||| ||||||| | || || | Sbjct 14096 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCAGCGG 14039 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 |||| || || || || | | | || ||| | | || || ||||| || || || | Sbjct 14038 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 13979 Query 166411 AAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 |||||||||| | ||||| ||| | || || || ||| | ||||||||||| || | Sbjct 13978 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACATG 13919 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATG 166496 | |||||||| ||||| ||||||||| Sbjct 13918 GGGCTTTTGCACTAATAGGTTTCATG 13893 >seq6788 Length=15930 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| |||| | || |||||||| |||| ||||| |||||| | Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||||||| || | |||| || | || ||||||| || |||||||||||||| Sbjct 6606 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTCC 6548 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || || || ||||||||||||||||| ||||| | |||||| || | || || ||||| Sbjct 6547 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 6488 Query 164943 CATCATCTCTGGT 164955 || ||||||||| Sbjct 6487 TATTATCTCTGGT 6475 >seq1910 Length=102200 Score = 104 bits (114), Expect = 3e-17 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||||| | | | || |||||||||||||| || ||||| || || | || || Sbjct 8353 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCTTT 8412 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||||||||| || || |||| Sbjct 8413 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 8472 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGG-AGGGTGCAAACTTTCTT-ACTGCGGCAG 166350 ||||| |||||| | || || ||| ||| ||| ||||| |||||| || || || | Sbjct 8473 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCAGCGG 8530 Query 166351 TTTCTACTCCAGC 166363 |||| || || || Sbjct 8531 TTTCCACCCCTGC 8543 >seq4399 Length=42927 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908 ||||||||||||| || ||||||| |||||| || ||||| ||| |||| ||| |||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGT 166945 | | ||||| |||||||||||||| ||||| || || Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGT 11221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563562983713920