Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq737 120 3e-22 seq837 82.4 9e-11 >seq737 Length=174138 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||| | |||||||| || |||| | || ||| || ||||| || Sbjct 54297 ACCACCTTGATCAACATAACGGGCAGTATCATTGAAAACGCGTAGCATGGGAACAATTCC 54238 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| || | ||||| ||||| ||||||||| || |||||| ||||| |||||| Sbjct 54237 ATTGGAAGTCCCATTTGTTCCTCGAATATAACTCCCTGTAGCTCGAATATTGTGAATTGA 54178 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 ||||| || || || || |||| ||| |||||| ||| ||||||||||| Sbjct 54177 GATACCGATTCCTCCAGCAGTTTTGCTTATAGCAGCACATTCCAAAAGAGTATCATAAAT 54118 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||| || ||||| |||||| |||| Sbjct 54117 TCCCTCAATACTGTCATCTTTCAT 54094 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 53983 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 53924 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| | | |||| || ||||| | ||||||||| | ||| || | |||||| Sbjct 53923 GTATGTTCTGACAGCAGATTCAATATCATCCTTATGTATACCAACAGAAACCCTCATTAA 53864 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| || ||||| |||| || | | |||||| ||||| ||| | || | Sbjct 53863 CATATGTTGTGGCCTTTCCACAACATTTCCACCAACTTTCAACAGATAAGATCTCTCAAG 53804 Query 48779 TGTTTTAAAACCAAAATA 48796 ||| |||||||||||||| Sbjct 53803 TGTCTTAAAACCAAAATA 53786 >seq837 Length=163444 Score = 82.4 bits (90), Expect = 9e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | ||| || | ||||| || |||||| ||||||| || || | || | Sbjct 144755 AGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 144814 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| | | |||| || ||||| | ||||||||| | ||| || | ||||| Sbjct 144815 GTATGTTCTGACAGCAGATTCAATATCATCCTTATGTATACCAACAGAAACCCTCATTAG 144874 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| || || ||||| |||| || | | |||||| || || ||| | || | Sbjct 144875 CATATGCTGTGGCCTTTCCACAACATTTCCACCAACTTTCAACAGGTAAGATCTCTCAAG 144934 Query 48779 TGTTTTAAAACCAAAATA 48796 ||| |||||||||||||| Sbjct 144935 TGTCTTAAAACCAAAATA 144952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562011253044120