Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq6788 104 7e-18 seq4399 84.2 6e-12 >seq6788 Length=15930 Score = 104 bits (114), Expect = 7e-18 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || || ||||| || | |||||||| || || | ||||| || Sbjct 6657 TGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCT 6598 Query 25871 TGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCGCCTGTAGAT 25930 |||| | | || ||| | ||||| | ||||||||||| || || || |||||| Sbjct 6597 ACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGAT 6538 Query 25931 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCA 25990 || ||||| || |||||||| ||||| || || ||| | || ||||||||||| || || Sbjct 6537 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 6478 Query 25991 GG 25992 || Sbjct 6477 GG 6476 >seq4399 Length=42927 Score = 84.2 bits (92), Expect = 6e-12 Identities = 112/157 (71%), Gaps = 9/157 (6%) Strand=Plus/Minus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | ||||||||||| || || | |||||||| ||||||| ||| Sbjct 12195 TTTATTATCGCCTTCATCGCTGCTCCTCAAGTAGATATTT---------GTGAGCCTGTT 12145 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 || || |||||| | | ||||||||||| || || || | || | || | ||| Sbjct 12144 TCTGGTTCGTTACTATGTGGAAACAATATTATCTCTGGTGTCGTTATTCCTACTTCTGCG 12085 Query 26015 GCAATCGGACTACATTTTTACCCGATCTGGGAAGCTG 26051 || |||||| ||||||||||||| || |||||||||| Sbjct 12084 GCGATCGGATTACATTTTTACCCAATATGGGAAGCTG 12048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146702210593992