Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_018860.1 Length=156176 Score E Sequences producing significant alignments: (Bits) Value seq9627 197 1e-45 seq10635 109 5e-19 >seq9627 Length=3127 Score = 197 bits (218), Expect = 1e-45 Identities = 166/204 (81%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 44109 TGGATAGTCGAAACGGATATGGTAATGGAATCGACCAGGACGACTAAGCATGAAGCTATT 44168 |||||| || || ||||||||||||||||||||||||||||| || | ||| || ||| Sbjct 881 TGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAACTCATT 822 Query 44169 TACTTTATGTAAATCGTTAACTGTGATAGCATACATACGTTTCTTTTGAGATGTACCATC 44228 ||| |||| | |||||| || || || ||||| ||||||||||| ||||| |||||||| Sbjct 821 TACCTTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTCTTCTGAGAAGTACCATC 762 Query 44229 GAATAGTCCTAGTAAACTGTCTTGCTTTTCTGCATCTTCATTACGTGGGTTGAACATCTT 44288 |||| || ||||| | || || |||||||| ||||||||||| || ||||||||||| Sbjct 761 AAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTGAACATCTT 702 Query 44289 TTCAAATTCATCGAATACAACTAA 44312 |||||| ||||| || | || ||| Sbjct 701 TTCAAACTCATCCAAGATAATTAA 678 Score = 192 bits (212), Expect = 6e-44 Identities = 230/314 (73%), Gaps = 15/314 (5%) Strand=Plus/Minus Query 44398 ACAACTCGTTCACCAATTAACTGCACGAACATTGATTTACCCATACCTTTGTGACCACTT 44457 |||||| ||| |||| | || || ||||| ||||||||||| ||||||| |||||| Sbjct 630 ACAACTGCTTCTGCAATAAGTTGAACAAACATAGATTTACCCATTCCTTTGTTACCACTC 571 Query 44458 AATATGATACCTAAGCTACGATCGAACTTGTTGTATGATTTTAGAACTTTATCAATCTTC 44517 || || | |||||||||||| || || || | |||||||||| ||||||| ||| || Sbjct 570 AAGATAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTTT 511 Query 44518 TCCTGGTGGCTACCGTAAATCTTTTCTTCTTTAGATACAAAGTTGTCAATTCTTTCTAAG 44577 || |||| || || ||||||||| |||| | ||| ||||||| ||||| | ||||| Sbjct 510 TCTGGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAAA 451 Query 44578 AAGAAGCCTGATCGTGGGTGGAACTCTGCTTTGTATGTACCCGCAGGTAATTTATCGTAA 44637 |||| ||||||| || ||||||||| | || |||| ||| || ||| Sbjct 450 GAGAAACCTGATCTTG--------------TTGTATGTAGCAGCTGGTAGTTTGTCATAA 405 Query 44638 GTTTTTAAGTCATCCCCATAGATTCTGTATGTAGTACCAACGCTAACGATTTTCATAATA 44697 |||||||||||||| || || ||| | || ||| | || | | ||| |||||||| | Sbjct 404 GTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT-TTT 346 Query 44698 ATTTTTCTCCTCTT 44711 || || ||||| || Sbjct 345 ATATTGCTCCTTTT 332 >seq10635 Length=1693 Score = 109 bits (120), Expect = 5e-19 Identities = 251/376 (67%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 93162 GCAAAACCACCGAATC--TACCTTTAACAAGTTTAGACAGGAATAAGTGTCTATTGTCAA 93219 ||| | |||||||||| ||| |||| ||| || | ||||||||| | || || | Sbjct 988 GCATATCCACCGAATCGGTAC--TTAATGTTTTTTGATAAGAATAAGTGACGGTTATCGA 1045 Query 93220 TTAATAGTTGACCTAGCGGACTGACTTTCATGTAGTCCTGCGGTCTTGTAAATAATAACT 93279 |||| | ||| || || ||| | || || ||||| |||| ||| | ||||| | || Sbjct 1046 TTAAGATTTGTCCGAGTGGAGTAACCTTGATGTAATCCTCCGGACGAACAAATAGGATCT 1105 Query 93280 CAATACTGTTTGGTGAGCTTGACATGGCATCCTTTACAAACTTGTTGATAGGGTCTACTC 93339 | || | || ||| |||| ||| ||||| | ||||||||||| | | | | Sbjct 1106 CGATGTTATTAGGTACGCTTTGCATAGCATCTCTAACAAACTTGTTCACATGAATGATGT 1165 Query 93340 TAATATCTACGGAATCTTTCGTGCTTCTAAAGTTTTTCGACCCTACATTATCATAACCTT 93399 | | ||| || ||| |||||| |||| |||||||| ||| | | || | | Sbjct 1166 TTACATCGACATCATCCTTCGTGTTTCTGAAGTTTTTACCACCTGATGTGTTGTACTCAT 1225 Query 93400 TAAAGGACTCAAGCCCTAAGTAGTAATCAATAGGTGGGATACATACACCTCTGAAGTCAT 93459 |||| || || | |||||||| || |||| |||||||| |||||||| | |||| | Sbjct 1226 TAAATGAATCCAAACCTAAGTAATACTCAACTGGTGGGATGCATACACCCTTATAGTCCT 1285 Query 93460 GATCTGAGTCTTCTGTCTCTGTCCCGTTAGCACGAGAACCATACGGAGCTAAAATAATCG 93519 |||||| ||||| ||||| || | ||| | ||| |||| || | || | Sbjct 1286 TATCTGATGTATCTGTATCTGTTCCATAGGCATAACTACCTGTAGGAGACAAGAGGATTG 1345 Query 93520 TTCTGTCTTCCATCCA 93535 |||| ||||| | ||| Sbjct 1346 TTCTATCTTCTAACCA 1361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499548494556480