Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1443 214 3e-50 seq3634 212 1e-49 >seq1443 Length=121453 Score = 214 bits (236), Expect = 3e-50 Identities = 512/765 (67%), Gaps = 26/765 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 25377 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 25436 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCA-- 47954 ||| || ||| ||||||| ||| |||| | | ||| |||| | || ||| Sbjct 25437 CATCCAGTCGAATGGGTTGGTGACGTTGTACATCTTCTTGT---GCCC--CAGTGCCATG 25491 Query 47955 -GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 ||||| | || |||||| |||||||||| | |||||| | ||||||||| | | Sbjct 25492 AGCAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACG 25551 Query 48014 AGGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || | || ||| | || | || ||||| ||| || | ||||| || | || Sbjct 25552 AGCGCGCATGGG-AGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGAC 25610 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| ||||||||||| | | ||| ||| ||| | | | ||||| | ||| Sbjct 25611 GATCTCGCGGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCA 25667 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||| ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || Sbjct 25668 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCC 25727 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||||| || | || ||||||||||| || || ||| ||||| ||||||||||| Sbjct 25728 CGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGAT 25787 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGA 48311 |||||| || ||||| ||| || | ||| | |||||| || | | || Sbjct 25788 GCCCTCGACGCAGGCGAAGGCGACTAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGA 25843 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 ||||| | ||||| || ||||| || | || | |||||| ||||| |||| Sbjct 25844 TCCAGCGCATGGCCCACTCGGCCTTGCGGCGGACGGCGGGGACCGTCTCGATGGCGCGGA 25903 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | || || |||||| | ||||| Sbjct 25904 AGAGGCGGTCCTT---CTCGGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACA 25960 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| | Sbjct 25961 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGA 26020 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| | || ||||| || || || || || || | Sbjct 26021 CCTGCACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGG 26080 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGG 48593 | |||||||| || || || | ||| |||||||||| | ||| Sbjct 26081 CGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGG 26125 >seq3634 Length=55208 Score = 212 bits (234), Expect = 1e-49 Identities = 509/762 (67%), Gaps = 20/762 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| |||| || ||||| ||| Sbjct 245 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATTAGCTC 304 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | ||| |||||| | ||| Sbjct 305 CATCCAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGT--GGCCCAGCGCCATGAGC 362 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | |||||| | ||||||||| | ||| Sbjct 363 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGC 422 Query 48017 GA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 | || ||| | || | || ||||| ||| || | ||||| || | || || Sbjct 423 GCGCATGGG-AGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGAT 481 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || ||||||||||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 482 CTCGCGGACGCGGGACTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAGGC 538 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| ||| || || Sbjct 539 GAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 598 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || ||||||||||| || || ||| ||||| |||||||||||||| Sbjct 599 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 658 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCC 48314 ||| || ||||| ||| || | ||| | |||||| || | | ||||| Sbjct 659 CTCGACGCAGGCGAAGGCGACTAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCC 714 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 || | ||||| || ||||| || | || | |||||| ||||| ||||||| Sbjct 715 AGCGCATGGCCCACTCGGCCTTGCGGCGGACGGCGGGGACCGTCTCGATGGCGCGGAAGA 774 Query 48375 ---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | | ||| ||| | |||| | || || |||||| | |||||||| Sbjct 775 GGCGGTCCTT---CTCGGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACATCT 831 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||||| ||||||||||| | ||||| |||| Sbjct 832 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGACCT 891 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 |||| || | ||| | || ||||| || || || || || || || | Sbjct 892 GCACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGGCGA 951 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGG 48593 ||||||| || || || | ||| |||||||||| | ||| Sbjct 952 AGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGG 993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931371144126720