Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3634 188 1e-42 seq1443 188 1e-42 >seq3634 Length=55208 Score = 188 bits (208), Expect = 1e-42 Identities = 488/736 (66%), Gaps = 24/736 (3%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| || || || ||| |||||| || | | | Sbjct 966 ACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCT 907 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || |||||| || ||||| |||||||| |||||||| ||||||| Sbjct 906 TCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCG 847 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| | ||| ||| ||||||||| |||| ||||| Sbjct 846 AGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCCG 787 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 ||| || || || || | ||||||||| | ||| | || | ||||| || Sbjct 786 AGAAGGACCGCCTCTTCCGCGCCATCGAGACGGTCCCCGCCGTCCGCCGCAAGGCCGAGT 727 Query 25835 GGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||||| |||||| || || ||||||| || |||||| || || ||||| Sbjct 726 GGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTAGTCGCCTTC 671 Query 25894 GC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || ||| || ||||||||||| ||| || || || |||| ||||||||||||||||| Sbjct 670 GCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGA 613 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || || ||| ||||||||||||||| | | |||||||| | Sbjct 612 AGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 553 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 ||||| | || || |||||||| |||||| | || | | | | ||| | || | | Sbjct 552 TCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGC--TC-GACG 499 Query 26072 AGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || | |||| | ||| || || || || || |||||| ||||| Sbjct 498 AGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCG 439 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| | ||||||||||| ||||| |||| Sbjct 438 ACGCGCTCCCATGCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACATCGAGT 379 Query 26189 ATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACA--GTACGCCTA 26245 || ||||||| ||||| || | |||||| | | | | |||| || |||| | Sbjct 378 TCGTCGCCGACCGCCTGCTCATGGC-GCTGGGCCACAAGAAGATGTACAACGT-CGCC-A 322 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| ||||||| ||||| || || || | || |||||||||||||| || ||| Sbjct 321 ACCCATTCGACTGGATGGAGCTAATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGC 262 Query 26306 GGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 261 GCGTCGGCGAGTACCA 246 >seq1443 Length=121453 Score = 188 bits (208), Expect = 1e-42 Identities = 487/736 (66%), Gaps = 24/736 (3%) Strand=Plus/Minus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| || || || ||| |||||| || | | | Sbjct 26098 ACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGCTCGAGAACCTCGCCTCCCGCT 26039 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || |||||| || ||||| |||||||| |||||||| ||||||| Sbjct 26038 TCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCG 25979 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| | ||| ||| ||||||||| |||| ||||| Sbjct 25978 AGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCCG 25919 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 ||| || || || || | ||||||||| | ||| | || | ||||| || Sbjct 25918 AGAAGGACCGCCTCTTCCGCGCCATCGAGACGGTCCCCGCCGTCCGCCGCAAGGCCGAGT 25859 Query 25835 GGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||||| |||||| || || ||||||| || |||||| || || ||||| Sbjct 25858 GGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTAGTCGCCTTC 25803 Query 25894 GC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGC 25951 || ||| || ||||||||||| ||| || || || |||| ||||||||||||||||| Sbjct 25802 GCCTGC-GTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCG-CCATCTTCTGGCTCAAGA 25745 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||| || || ||| ||||||||||||||| | | |||||||| | Sbjct 25744 AGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCC 25685 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 ||||| | || || |||||||| |||||| | || | | | | ||| | || | | Sbjct 25684 TCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGC--TC-GACG 25631 Query 26072 AGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || | |||| | ||| || || || || || |||||| ||||| Sbjct 25630 AGTCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCG 25571 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| | ||||||||||| ||||| |||| Sbjct 25570 ACGCGCTCCCATGCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACATCGAGT 25511 Query 26189 ATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAGTACG--CCTA 26245 || ||||||| ||||| || || ||||| | | | | |||| ||| | | Sbjct 25510 TCGTCGCCGACCGCCTGCTCATGGCA-CTGGGGCACAAGAAGATGTACA--ACGTCACCA 25454 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| ||||||| ||||| ||| || || | || |||||||||||||| || ||| Sbjct 25453 ACCCATTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGC 25394 Query 26306 GGGTCGGCGACTATCA 26321 | |||||||| || || Sbjct 25393 GCGTCGGCGAGTACCA 25378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928683610595520