Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_019502.1 Length=44401 Score E Sequences producing significant alignments: (Bits) Value seq13854 504 2e-138 seq9885 109 2e-19 seq13197 82.4 2e-11 >seq13854 Length=613 Score = 504 bits (558), Expect = 2e-138 Identities = 488/633 (77%), Gaps = 22/633 (3%) Strand=Plus/Minus Query 42562 CAAGTCCCTTATATCTCAAATGAGCAGATGTGGGACGTATTAAAACAATACGAGGTGAAA 42621 ||||| |||||||| | ||||| |||||||||| ||| |||||||||| |||||||| Sbjct 612 CAAGTTCCTTATATTACGAATGAAAAGATGTGGGATGTACTAAAACAATATGAGGTGAAG 553 Query 42622 AAGGATGCATATACAGACACATATCAAAATGAATCGTCAGATGATGATTTTTACCTCGAT 42681 || |||| | || ||||||||||||||||| || | || ||||||||| | |||||||| Sbjct 552 AAAGATGAACATCCAGACACATATCAAAATCAACAGACAAATGATGATTCTGACCTCGAT 493 Query 42682 TAGAAAATTAAAATTCGCTACCAGAAGACATTTGATGGCCATTCATGATATGGGAGGAAT 42741 |||||| | ||||| ||||| | || ||||| ||||| || |||||| | || || || Sbjct 492 TAGAAAGCTGAAATTTGCTACACGTAGGCATTTAATGGCTATACATGATTTAGGTGGCAT 433 Query 42742 TCGGAATGCAAACCGGATTTTAAAAGACTTAACCCCATATGTAAACAGTACCGTTTATAA 42801 | ||||||||||| || ||||| || |||| | ||| ||| || ||||| || ||||| Sbjct 432 AAGAAATGCAAACCGCATATTAAAGGATTTAAGCTCATTTGTGAATAGTACAGTGTATAA 373 Query 42802 AAAAGAGCATGTATATTACCTCAATAAACAGGGACGTGCGCTATTCGATGATACAGAAAA 42861 |||||| |||||||||||||| |||||| | || | | |||||| ||||||| || || Sbjct 372 AAAAGAACATGTATATTACCTAAATAAAAATGGTAGAGAGCTATTTGATGATAATGAGAA 313 Query 42862 GGTTGTGCCTACCATTCGATTAGCACACAGCCTCATGAGAAACGAAGCGTGGCTATATCT 42921 ||| | || | | ||| ||||| || || || |||||||| ||||| ||||| ||||| Sbjct 312 AGTTATACCCAATAGTCGGTTAGCGCATAGTCTTATGAGAAATGAAGCATGGCTTTATCT 253 Query 42922 GTTTTGTCCTGAAGATTGGCAGATAGAAGCCCCTATACGTTATAAAGTACATGACAATAA 42981 ||||||||| || | || ||||||||| ||||| || Sbjct 252 GTTTTGTCCCGATG----------------------ACTNTATAAAGTAAATGACCGAAA 215 Query 42982 GAGAACGATTATTCCAGACGTAAAGTACCGTGATAGCGATGGGATTCTAAATGCAGTCGA 43041 || |||||||||| | || || || | ||| ||| ||| ||||| |||| || || || Sbjct 214 GAAAACGATTATTTCTGATGTGAAATTCCGGGATGACGACGGGATATTAAACGCTGTAGA 155 Query 43042 AATAGATCGCACACAAATGATGAATGTGAACAGTGAAAAAATGAATAAATATGGTGAATT 43101 ||| ||||| | ||| | ||||||| | ||| ||||||||||||| ||||||||||| Sbjct 154 AATTGATCGTAAACAGACGATGAATATAAACGCTGAAAAAATGAATCGGTATGGTGAATT 95 Query 43102 CACTTTGTATTATAAAAACAAATATAACGGGAAAGTCCCTATTGTTCAtttttttACAAT 43161 |||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| | Sbjct 94 CACTGTGTATTATAAAAACAAATATAACGGGAAAGTCCCTATTATTCACTTTTTTACACT 35 Query 43162 TACACCATATAGGCAAAATACACTAGAACAATT 43194 ||| |||| |||||||| || |||||||||| Sbjct 34 CACATCATACAGGCAAAAGACGTTAGAACAATT 2 >seq9885 Length=2412 Score = 109 bits (120), Expect = 2e-19 Identities = 167/240 (70%), Gaps = 11/240 (5%) Strand=Plus/Plus Query 37617 AAGTGTCCTTATACAATGAATCCAAAATTTATCACAGTTCACAATACGTATAATGATGCG 37676 |||||||||||| | ||||| || | | || ||||| || || || |||||||||||| Sbjct 1825 AAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATAACACTTATAATGATGCG 1884 Query 37677 CCAGCTGAGAATGAAATTGCTTATATGATACGAAATAATAATGAGGTGTCATTCCACATT 37736 || ||| |||| || | ||| ||||| |||| | ||||||||| | Sbjct 1885 CCTGCTAAGAACGAGGTAAATTACATGATCGGAAA-----------TTTCATTCCACTTC 1933 Query 37737 GCAGTAGACGATAAAGAAGCTGTACAAGGCTTACCTTTAGAAAGGAATGCATGGGCTTGT 37796 |||||||| |||| |||| | | ||||| | || | || | ||||| ||| |||| Sbjct 1934 GCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATCGTAATGCTTGGCATTGT 1993 Query 37797 GGAGATGGGAATGGTTCAGGAAACAGAAAGTCGATTAGTGTGGAGATTTGTTATTCTTTA 37856 || ||||| |||| |||||| |||| || || |||| || || ||||| || ||| Sbjct 1994 GGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTGAAATCTGTTACTCATTA 2053 >seq13197 Length=1061 Score = 82.4 bits (90), Expect = 2e-11 Identities = 142/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 17948 AACTAAACAAGAACAAGCGGTTGCAATTGGTACATTCAT-TTCA--ATGCTAGGACAAGA 18004 ||| |||||||||||| | ||| || |||| || || || || || ||| || Sbjct 146 AACAAAACAAGAACAAACAGTTATTATCGGTAAGTTAATCAACAACATTCTCGGAGTGGA 205 Query 18005 CCTTGTAAATGAACGCATTGATAAACAGAAATTAGAAAATGTACTTCCTATCTTTAATGA 18064 | || || |||| ||||||| ||||||| | || || | || |||| |||| Sbjct 206 ATTGGTGAAGGAACACATTGATCCACAGAAACTTGAGAAGGCTGTTGCTATGCATAATAT 265 Query 18065 AATGCAAGATAATACAACACCAAAGCAAAAGAGAGAAGCAATGATTAGTTTGCTTGGTAA 18124 |||| | ||| ||| ||||||| | ||| |||||||| | |||||| || | |||| Sbjct 266 AATGAATGATGATATGACACCAAGGGAAACAAGAGAAGCGCTTATTAGTGTGTTAGGTAG 325 Query 18125 AGCGGTGGATGAATTCTTAGAAAA 18148 |||| | ||||||||| | || || Sbjct 326 AGCGATAGATGAATTCCTTGAGAA 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141938196121898