Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_019515.1 Length=93839 Score E Sequences producing significant alignments: (Bits) Value seq11880 167 1e-36 >seq11880 Length=1288 Score = 167 bits (184), Expect = 1e-36 Identities = 216/294 (73%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 21983 TAAATACTTATCGAAATATTTTCCGGAAGCATAATCCGATTTCTCGAATCCTTTAAATGT 22042 ||||||||| || ||||| | || ||||| || |||||||||||||||| ||| | Sbjct 190 TAAATACTTCTCAAAATAAGTACCTTTTGCATACTCAGATTTCTCGAATCCTTCAAAAGA 249 Query 22043 TTCACCT-TTTCTCAATGCTATTTCTGCG--CTTGCTTCAATTGAGTAATAGTTCAACAT 22099 | | ||| ||||| | || || |||| ||| ||| || |||| |||||||| ||| Sbjct 250 TACTCCTCTTTCTTTA-GCAATCTCTGTAGACTT--TTCGATAGAGTGATAGTTCAGCAT 306 Query 22100 CATGAAGAATGTACGAGCAAAGTCTTTCGCTTCTTCAGATTCATAAGCAATCAAGTTTTT 22159 |||||| ||||||||||||||| || ||||| ||||| || | ||| ||||| || Sbjct 307 TGCAAAGAATACACGAGCAAAGTCTTTTGCATCTTCTGATTCGTATGGAATGAAGTTCTT 366 Query 22160 AGATAAGTAGCCATGTAAGTTCATAGCTCCTAATCCTACTGAATGTAATTCTTCATTTGC 22219 || | | | ||||| | |||||| | ||| | |||||||| |||||| |||| || Sbjct 367 AGCAAGGAATCCATGAAGGTTCATTGTTCCAAGACCTACTGAGTGTAATGTAGCATTCGC 426 Query 22220 TTTTTTAACACCTGGGGCGTTTTGGATCACCGACATATCTGATACCGCAGTTAA 22273 ||| |||||||| || ||||||| ||| ||| |||||| || | ||||| Sbjct 427 TTTCTTAACACCAGGAGCGTTTTCGATACAAGACTTATCTGTAACATCTGTTAA 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300109213209400