Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq4399 113 5e-20 seq6788 91.5 2e-13 >seq4399 Length=42927 Score = 113 bits (124), Expect = 5e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 10503 ATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATA 10562 |||| ||||||||||||||||| || |||||||| || ||||| |||||||| ||||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 10563 AACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGT 10599 |||| ||| | |||||||||||||| |||||||| || Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGT 11221 >seq6788 Length=15930 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||| | ||| | ||| ||| | ||||| | || |||| |||||||| ||| | Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 8308 ATGATCCCAACCCTTCTTG-CCGCTACAATTTGC---TTCATTACCGCATTCGTTGCTGC 8363 |||||||| ||| || ||| |||| || || | || |||| ||| ||| | ||||| Sbjct 6606 ATGATCCCTACC-TTATTGACCGCAAC---TTCCGTATTTATTATCGCCTTCATCGCTGC 6551 Query 8364 TCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAA 8423 |||||| || || || || || || || || || ||| |||| ||| | | || || || Sbjct 6550 TCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAA 6491 Query 8424 CAACATCATCTCTGGT 8439 ||| || ||||||||| Sbjct 6490 CAATATTATCTCTGGT 6475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516390371352000