Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq5025 208 8e-49 seq1910 140 4e-28 seq4399 107 2e-18 seq6788 96.9 4e-15 >seq5025 Length=34140 Score = 208 bits (230), Expect = 8e-49 Identities = 251/338 (74%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| ||||||||||||||||| || ||||| | Sbjct 14228 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGC 14169 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||||||| | ||| | ||||||||| |||| ||||||||||| Sbjct 14168 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 14109 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT-GCAAACTTTCT 162295 || || ||||||||| || ||| | || ||||||||| | || ||| |||| ||||| Sbjct 14108 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 14051 Query 162296 TA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGG 162354 || | || || ||||| || || || | | | | || ||| | |||| ||||||| Sbjct 14050 TAACGGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 13991 Query 162355 GTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTG 162414 | || || | |||||||| || | || ||||| ||| | || || || |||||||||| Sbjct 13990 GACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 13931 Query 162415 TGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATG 162452 | || || || || || |||||||| |||||||||||| Sbjct 13930 TTGCTCTACATGGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 140 bits (154), Expect = 4e-28 Identities = 156/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| ||||||||||||||||| || ||||| || Sbjct 8341 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 8400 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||||||| | ||| | ||||||||| |||| ||||||||||| Sbjct 8401 CTATTACTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 8460 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCT 162295 || || ||||||||| || ||| | || ||||||||| | | ||| ||||| ||||| Sbjct 8461 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 8518 Query 162296 T-ACTGCGGCAGTTTCTACTCCAGC 162319 | || || || ||||| || || || Sbjct 8519 TAACGGCAGCGGTTTCCACCCCTGC 8543 >seq4399 Length=42927 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 162805 ATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACA 162864 |||| ||||||||||| |||||||| ||||| || || || ||| |||||||| || | Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 162865 AGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCA 162903 | |||||||| |||||||||||||| ||||| ||||||| Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 11223 >seq6788 Length=15930 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||||| | || |||||||| || || ||||| | || ||||| || || || Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 160936 ATGATTCC---CTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCT 160992 ||||| || || ||| ||| || || | | | | ||| |||||| | | |||| Sbjct 6606 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATC---GCCTTCATCGCTGCT 6550 Query 160993 CCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 161052 || || || || || || || |||||||| || || ||||||| | | ||||||||| Sbjct 6549 CCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAAC 6490 Query 161053 AACATCATCTCTGGT 161067 || || ||||||||| Sbjct 6489 AATATTATCTCTGGT 6475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547652145320280