Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq5025 140 4e-28 seq4399 98.7 1e-15 seq1910 93.3 5e-14 seq2985 84.2 3e-11 >seq5025 Length=34140 Score = 140 bits (154), Expect = 4e-28 Identities = 235/339 (69%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 102387 CATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAG 102446 ||||||||| || || ||||| || || || ||||| ||||||| ||| || || || | Sbjct 13893 CATGAAACCTATTAGTGCAAAAGCCCCATGTAGAGCAACAAAAGTCCACAGACCACCTAA 13952 Query 102447 TTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATG 102506 ||| ||| | ||||| ||||| ||||| || ||||| ||||| | | ||| || Sbjct 13953 TTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGTCCCCATAGTAGCAACAAAGAGTG 14012 Query 102507 ACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTA 102566 | | | | ||||| || || || || || || | |||||| |||||| | || Sbjct 14013 TGCTAAACTATTGGCAGGGGTGGAAACCGCTGCCGTTAAGAAATTGCAACCTTCCAAATA 14072 Query 102567 ---ACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCA 102623 ||||| | | || ||||||||||| ||||| |||| || || || |||| ||| Sbjct 14073 GGAACTAG---CTAATCCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCA 14129 Query 102624 GCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGAC 102683 ||||| | |||| ||||||| ||||| || | ||| | ||||| || ||||| || Sbjct 14130 ACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCTGGACCATCCTACAAAAAC 14189 Query 102684 AAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 || || || | | | |||||| |||| || ||||| Sbjct 14190 GAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAA 14228 >seq4399 Length=42927 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 101938 ACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAG 101997 || || ||||| |||||||||||||| ||||| | ||||| ||| |||| ||||||| Sbjct 11221 ACGGGTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAG 11162 Query 101998 ATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAAT 102034 ||||| ||||| || ||||| || ||||||||||||| Sbjct 11161 ATTTGGGACCAAAAGCGGTTAGCAGTAACCATTGAAT 11125 >seq1910 Length=102200 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 102520 GCAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTA---ACTAGACGCA 102576 ||||| || || || || || || | |||||| |||||| | || ||||| | Sbjct 8543 GCAGGGGTGGAAACCGCTGCCGTTAAGAAATTGCAACCTTCCAAATAGGAACTAG---CT 8487 Query 102577 AGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCG 102636 | || ||||||||||| ||||| |||| || || || |||| ||| ||||| | ||| Sbjct 8486 AATCCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCG 8427 Query 102637 AGATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGT 102696 | ||||||| ||||| || | ||| || ||||| || ||||| || || || || | | Sbjct 8426 AAATAAGCACAAGGAAAGAGTAATAGGCCGGACCATCCTACAAAAACGAAACGGTCCCTT 8367 Query 102697 TTAATCCAGTCATCCAGGATGTCAAA 102722 | |||||| |||| || ||||| Sbjct 8366 CGTAACCAGTCGTCCATAATATCAAA 8341 >seq2985 Length=69808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 ||||| | |||||| ||||| ||| | ||| | | | || | ||||| || |||||| Sbjct 54424 GGGTACGACACGCATGTCAGCACATAGCCTTCAGCCTGCTGCCCATCATCAAGGAAGGAT 54365 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 ||| |||||||| || | ||||| || ||||| || || || || || ||| Sbjct 54364 CCATCCGACTGATCTACCTCGCCAGCCTCAATTTTGCCAGCGCAGGTGGAGCAAGCCCCA 54305 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATA 102999 || || || || || |||| || ||||| || || ||||||||||| || || || Sbjct 54304 GCGCGGCATGAGTATGGCAACTCCACACCAGCATCCTCAGCAGCGTCGAGGATGTA 54249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633403661633640