Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq737 107 1e-18 seq837 98.7 5e-16 >seq737 Length=174138 Score = 107 bits (118), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || || ||||||||||| || || | ||||| ||||||||||| | Sbjct 54313 TACCTTTTCTCTTGCCACCACCTTGATCAACATAACGGGCAGTATCATTGAAAACGCGTA 54254 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | |||| | ||| || ||||| | |||| | ||||| | || Sbjct 54253 GCATGGGAACAATTCCATTGGAAGTCCCATTTGTTCCTCGAATATAACTCCCTGTAGCTC 54194 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 ||||| |||| ||| ||||||||||| ||||| ||| ||||| ||||| || Sbjct 54193 GAATATTGTGAAT-TGAGATACCGATTCCTCCAGCAGTTTTGCTTATAGCAGCACATTCC 54135 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 ||| ||||| ||||||| | || || ||| ||||||| Sbjct 54134 AAAAGAGTATCATAAATTCCCTCAATACTGTCATCTTTCAT 54094 >seq837 Length=163444 Score = 98.7 bits (108), Expect = 5e-16 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || || ||||||||||| || || | ||||| ||||||||||| | Sbjct 144425 TACCTTTTCTCTTGCCACCACCTTGATCAACATAACGGGCAGTATCATTGAAAACGCGTA 144484 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | |||| | ||| || ||||| | |||| | || || | || Sbjct 144485 GCATGGGAACAATTCCATTGGAAGTCCCATTTGTTCCTCGAATGTAACTCCCGGTAGCTC 144544 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 || || |||| ||| ||||||||||| ||||| ||| ||||| ||||| || Sbjct 144545 GAACATTGTGA-ATTGAGATACCGATTCCTCCAGCAGTTTTGCTTATAGCAGCACATTCG 144603 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 |||| ||||| | ||||| | || || ||| ||||||| Sbjct 144604 GAAAGAGTATCATATATTCCCTCAATACTGTCATCTTTCAT 144644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252997185869225