Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5025 156 5e-33 seq1910 116 4e-21 >seq5025 Length=34140 Score = 156 bits (172), Expect = 5e-33 Identities = 242/344 (70%), Gaps = 10/344 (3%) Strand=Plus/Plus Query 123565 GAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCC 123624 || |||||||||||| ||| |||| | ||||||| || ||||| |||| ||||| || Sbjct 13890 GAACATGAAACCTATTAGTGCAAAAGCCCCATGTAGAGCAACAAAAGTCCACAGACCACC 13949 Query 123625 GAGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GA 123682 | ||| |||||||| || ||||||||||| |||||||| || | || | || Sbjct 13950 TAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGTCCCCATAGTAGCAACAAAGA 14009 Query 123683 CTATG---ACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCC 123739 | || | | |||| |||| ||||| || ||||| |||||||| || || Sbjct 14010 GTGTGCTAAACTATTGG-----CAGGGGTGGAAACCGCTGCCGTTAAGAAATTGCAACCT 14064 Query 123740 TCAAGATATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAG 123799 || | ||| ||| || | ||||| |||||||| || || || || ||||| ||| Sbjct 14065 TCCAAATAGGAACTAGCTAATCCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTA 14124 Query 123800 AACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATG 123859 |||||||| || | | | ||| |||||||| | || || || | |||||||||| Sbjct 14125 AACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCTGGACCATCCTACA 14184 Query 123860 AATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 || || ||||| || || |||||||||||| | || |||||| Sbjct 14185 AAAACGAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAA 14228 >seq1910 Length=102200 Score = 116 bits (128), Expect = 4e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 123702 CAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATAC 123761 |||| ||||| || ||||| |||||||| || || || | ||| ||| || | | Sbjct 8542 CAGGGGTGGAAACCGCTGCCGTTAAGAAATTGCAACCTTCCAAATAGGAACTAGCTAATC 8483 Query 123762 CATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGAT 123821 |||| |||||||| || || || || ||||| ||| |||||||| || | | | || Sbjct 8482 CATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAAAT 8423 Query 123822 ACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTA 123881 | |||||||| | ||||| || || |||||||||| || || ||||| || || || Sbjct 8422 AAGCACAAGGAAAGAGTAATAGGCCGGACCATCCTACAAAAACGAAACGGTCCCTTCGTA 8363 Query 123882 ACCAGTCGTCAAGAACATCAAA 123903 |||||||||| | || |||||| Sbjct 8362 ACCAGTCGTCCATAATATCAAA 8341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578897922065160