Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq5025 172 7e-38 seq1910 122 1e-22 seq6788 104 3e-17 >seq5025 Length=34140 Score = 172 bits (190), Expect = 7e-38 Identities = 243/339 (72%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 24066 AACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCA 24125 ||||| |||||||| |||||||| || || || ||||||||||| | ||| || || || Sbjct 13891 AACATGAAACCTATTAGTGCAAAAGCCCCATGTAGAGCAACAAAAGTCCACAGACCACCT 13950 Query 24126 AGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAA 24185 | ||| ||| || ||| |||||||| | || || ||||| ||||| | | ||| Sbjct 13951 AATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGTCCCCATAGTAGCAACAAAGAG 14010 Query 24186 TGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG-TAAGAAAGTTAGCACCCTCAAG 24244 || | | | | ||||| || || || ||||||| ||||||| || ||| || | Sbjct 14011 TGTGCTAAACTATTGGCAGGGGTGGAAACCGCTGCCGTTAAGAAA-TTGCAACCTTCCAA 14069 Query 24245 ATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCA 24304 |||||||||||| | ||||||||| |||||| || ||||||| || || |||| ||| Sbjct 14070 ATAGGAACTAGCTAATCCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCA 14129 Query 24305 ACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGAC 24364 ||| || | || | ||||||| |||| || | || | ||||| || ||||| || Sbjct 14130 ACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCTGGACCATCCTACAAAAAC 14189 Query 24365 AAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAAA 24403 || || |||| | | ||||||||||| || ||||| Sbjct 14190 GAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAA 14228 >seq1910 Length=102200 Score = 122 bits (134), Expect = 1e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24201 GCAGGCGTCGAGACAGCTGCCGT-AAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAG 24259 ||||| || || || |||||||| |||||| || ||| || | |||||||||||| | Sbjct 8543 GCAGGGGTGGAAACCGCTGCCGTTAAGAAA-TTGCAACCTTCCAAATAGGAACTAGCTAA 8485 Query 24260 TCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAG 24319 ||||||||| |||||| || ||||||| || || |||| |||||| || | || | Sbjct 8484 TCCATGGGTATACCAAGAAGTTACAAAAGTAGTCCCTGTAAACCAACCCCCTAAAGCGAA 8425 Query 24320 ATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTT 24379 ||||||| |||| |||| || || ||||| || ||||| || || || |||| | Sbjct 8424 ATAAGCACAAGGAAAGAGTAATAGGCCGGACCATCCTACAAAAACGAAACGGTCCCTTCG 8365 Query 24380 AACCCAGTCGTCCAAGATGTCAAA 24403 | ||||||||||| || ||||| Sbjct 8364 TAACCAGTCGTCCATAATATCAAA 8341 >seq6788 Length=15930 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 |||||| || || ||||| ||||| | | ||||||| ||| || ||||||||||| || Sbjct 6475 ACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATC 6534 Query 27585 AATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTAACAG 27644 |||||| || || || || |||||||| |||| ||| || | |||||| | || | Sbjct 6535 AATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAA 6594 Query 27645 TGTTGGGATCATCAGTACACCGAACCAACC 27674 || |||||||||| ||||| ||||| || Sbjct 6595 GGTAGGGATCATCAAAACACCAAACCATCC 6624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665378911765560