Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3634 123 3e-23 seq1443 123 3e-23 seq4632 120 4e-22 seq2924 111 2e-19 seq5229 105 8e-18 seq3299 102 1e-16 seq322 102 1e-16 seq3283 98.7 1e-15 seq1932 93.3 5e-14 seq6216 84.2 3e-11 >seq3634 Length=55208 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 695 CTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 636 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 635 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 576 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 575 GCTCATCTCCCGCGACGAGGGCCTCCAC 548 >seq1443 Length=121453 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 25827 CTTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 25768 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 25767 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 25708 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| |||||| Sbjct 25707 GCTCATCTCCCGCGACGAGGGCCTCCAC 25680 >seq4632 Length=39362 Score = 120 bits (132), Expect = 4e-22 Identities = 218/320 (68%), Gaps = 12/320 (4%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||||||||| ||| ||| |||| || ||| || || || || || ||| Sbjct 26765 GGAGCCAAGATCCCAAAGGGCTGCCTCCTCGTCGGCCCGCCTGGGACAGGTAAAACTCTC 26706 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 ||||| || ||| |||| || || | || || ||| || ||| |||| || | Sbjct 26705 CTCGCGCGTGCCGTCGCCGGAGAGGCCGGGGTGCCGTTCTTCTCCTGCGCTGCGTCAGAG 26646 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | ||||| ||||| |||||| || || || || |||||||| | ||| Sbjct 26645 TTCGTCGAGCTCTTTGTCGGTGTCGGTGCCTCCAGAGTGCGTGACCTCTTTGAGAAGGCC 26586 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || |||||||||||||||||||||||||| || || | ||| || Sbjct 26585 AAGGCCAAGGCGCCCTGCATTGTCTTCATTGATGAGATTGATGCTGTTGGGAGGCAGCGT 26526 Query 175516 AGCGC------TGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | || ||||||| | ||| || ||||| || || || ||||| || | Sbjct 26525 GGTGCCGGGCTTGGTGGT------GGAAACGATGAGAGGGAGCAGACCATTAACCAGTTG 26472 Query 175570 CTCACCGAGATGGATGGCTT 175589 || || ||||||||||| || Sbjct 26471 CTGACAGAGATGGATGGATT 26452 >seq2924 Length=71133 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| ||||||| ||||||||| | | ||| Sbjct 65977 TTTGTGGAGATGTTTGTCGGTGTTGGTGCCTCCCGGGTTCGTGATCTCTTTAAGAAGGCC 66036 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || || || || || || || ||||||| || ||||| || || | |||| | Sbjct 66037 AAGGAGAACGCCCCTTGCATAGTGTTTGTTGATGAAATCGATGCTGTTGGAAGGCAAAGA 66096 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | |||||||| | || Sbjct 66097 GGAACCGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTCTGAATCAACTTTTGACT 66156 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| |||||||| | | Sbjct 66157 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACTAACAGAGCT 66216 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | ||| ||| | ||| | || || || ||||| Sbjct 66217 GACATCTTGGATTCAGCCTTGCTTAGACCTGGACGATTTGA 66257 Score = 109 bits (120), Expect = 7e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| ||||||| ||||||||| | | ||| Sbjct 65423 TTTGTGGAGATGTTTGTCGGTGTTGGTGCCTCCCGGGTTCGTGATCTCTTTAAGAAGGCC 65482 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || || || || || || || ||||||| || ||||| || || | |||| | Sbjct 65483 AAGGAGAACGCCCCTTGCATAGTGTTTGTTGATGAAATCGATGCTGTTGGAAGGCAAAGA 65542 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||||||| | || Sbjct 65543 GGAACCGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTCTGAATCAACTATTGACT 65602 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 ||||||||||| ||||| | ||||| || | |||||||| |||||||| Sbjct 65603 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCCGCCACTAA 65655 >seq5229 Length=31845 Score = 105 bits (116), Expect = 8e-18 Identities = 215/320 (67%), Gaps = 12/320 (4%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||||||||| ||| ||| |||| || || || || || || || ||| Sbjct 26834 GGAGCCAAGATCCCAAAGGGCTGCCTCCTCGTCGGCCCACCTGGGACAGGTAAAACTCTC 26775 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 ||||| || ||| |||| || || | || || ||| || ||| | || | | Sbjct 26774 CTCGCGCGTGCCGTCGCCGGAGAGGCCGGGGTGCCGTTCTTCTCCTGCGCCGCGTCTGAG 26715 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| | ||||| ||||| |||||| || || || || |||||||| | ||| Sbjct 26714 TTCGTCGAGCTCTTTGTCGGTGTCGGTGCCTCCAGAGTGCGTGACCTCTTTGAGAAGGCC 26655 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || |||||||||||||||||||||||||| || || | ||| || Sbjct 26654 AAGGCCAAGGCGCCCTGCATTGTCTTCATTGATGAGATTGATGCTGTTGGGAGGCAGCGT 26595 Query 175516 AGCGC------TGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | || ||||||| | ||| || ||||| || || || ||||| || | Sbjct 26594 GGTGCCGGGCTTGGTGGT------GGAAACGATGAGAGGGAGCAGACCATTAACCAGTTG 26541 Query 175570 CTCACCGAGATGGATGGCTT 175589 || || ||||||||||| || Sbjct 26540 CTGACAGAGATGGATGGATT 26521 >seq3299 Length=62565 Score = 102 bits (112), Expect = 1e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| ||||| |||||| ||||||| ||||| || | | ||| Sbjct 2206 TTTGTGGAGATGTTTGTCGGTGTTGGTGCCTCCCGGGTTCGTGATCTTTTCAAGAAGGCC 2147 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || || || || || || || ||||||| || ||||| || || | |||| | Sbjct 2146 AAGGAGAACGCCCCTTGCATAGTGTTTGTTGATGAAATCGATGCTGTTGGAAGGCAAAGA 2087 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | |||||||| | || Sbjct 2086 GGAACCGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTCTGAATCAACTTTTGACT 2027 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| |||||||| | | Sbjct 2026 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACTAACAGAGCT 1967 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 || ||| | ||| ||| | ||| | || || || ||||| Sbjct 1966 GACATCTTGGATTCAGCCTTGCTTAGACCTGGACGATTTGA 1926 >seq322 Length=237900 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624 |||| | ||||| ||| | |||| | || ||||||||||| || | | || || || Sbjct 17516 AACTCCTCCACAGTGTGGGACTCCTCGGTGGCGACAACATAGTCCCCGGGCTGATCCTGC 17457 Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || |||||||||||||| || || ||||||||| |||| |||||||| ||||||||| Sbjct 17456 TGCAGCATGAGCCACATTGCCTCGACATAGTCCCCGGCAAATCCCCAGTCCCTGGCAGCG 17397 Query 177685 TTGAGGTTACCGAG 177698 ||||||| || || Sbjct 17396 GTGAGGTTGCCAAG 17383 >seq3283 Length=62733 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 177565 AACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGT 177624 |||| | ||||| ||| | |||| | || ||||| ||||| || | | || || || Sbjct 23859 AACTCCTCCACAGTGTGGGACTCCTCGGTGGCGACGACATAATCCCCGGGCTGATCCTGC 23918 Query 177625 TGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCG 177684 || |||||||||||||| || || || |||||| |||| |||||||| ||||||||| Sbjct 23919 TGTAGCATGAGCCACATTGCCTCGACGTAGTCCCCGGCAAATCCCCAGTCCCTGGCAGCG 23978 Query 177685 TTGAGGTTACCGAG 177698 ||||||| ||||| Sbjct 23979 GTGAGGTTGCCGAG 23992 >seq1932 Length=101031 Score = 93.3 bits (102), Expect = 5e-14 Identities = 182/267 (68%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 175235 TTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAG 175294 ||||| ||||||| || | ||| ||| |||| | | ||| || || || || | Sbjct 75700 TTGTGCATTTTCTGAAAAATCCCAAGAAATATGAAGAACTTGGAGCTAAAATACCAAAGG 75759 Query 175295 GCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGG 175354 | || ||||| | ||| || || |||||||| || ||||||||| ||| | ||| | Sbjct 75760 GTGCTCTTCTTGTTGGTCCCCCTGGCACGGGAAAAACGCTCCTCGCCAAAGCTACCGCAG 75819 Query 175355 GTGAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGT 175412 | || || |||| || ||| | | | | |||| || |||| |||||||||| || Sbjct 75820 GAGAGTCTGATGTGCCCTTCTTGTCTATT--TCTGGTTCAGACTTCATGGAGATGTTCGT 75877 Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATG 175472 |||||| || | ||||| || | ||| || || || || | ||| | Sbjct 75878 TGGTGTTGGACCATCCAGGGTGCGAAGCTTATTTCAAGAAGCTCGACAATGTGCACCTAG 75937 Query 175473 TATTGTCTTCATTGATGAGATTGATGC 175499 ||||||||||||||||||||||||||| Sbjct 75938 TATTGTCTTCATTGATGAGATTGATGC 75964 >seq6216 Length=21153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 180/267 (67%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 175235 TTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAG 175294 ||||| | ||||| || | ||| ||| |||| | | ||| || || || || | Sbjct 11186 TTGTGCACTTTCTGAAAAATCCCAAGAAATATGAAGAACTTGGAGCTAAAATACCAAAGG 11245 Query 175295 GCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGG 175354 | || ||||| | ||| || || |||||||| || ||||||||| ||| | ||| | Sbjct 11246 GTGCTCTTCTTGTTGGTCCCCCTGGCACGGGAAAAACGCTCCTCGCCAAAGCTACCGCAG 11305 Query 175355 GTGAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGT 175412 | || || |||| || ||| | | | | |||| || |||| |||||||||| || Sbjct 11306 GAGAGTCTGATGTGCCCTTCTTGTCTATT--TCTGGTTCAGACTTCATGGAGATGTTCGT 11363 Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATG 175472 |||||| || | ||||| || | ||| || || || || | ||| | Sbjct 11364 TGGTGTTGGACCATCCAGGGTGCGAAGCTTATTTCAAGAAGCTCGACAATGTGCACCTAG 11423 Query 175473 TATTGTCTTCATTGATGAGATTGATGC 175499 |||||| |||||||||||||||||||| Sbjct 11424 TATTGTATTCATTGATGAGATTGATGC 11450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596466072803040