Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq6788 104 7e-18 seq4399 84.2 6e-12 >seq6788 Length=15930 Score = 104 bits (114), Expect = 7e-18 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 26669 CCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCT 26728 || || || ||||||||||| || | ||| || || ||||| |||||||| || ||||| Sbjct 6476 CCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCA 6535 Query 26729 ATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAG 26788 |||||||| || || || ||||||||||| | ||||| | ||| || | | |||| Sbjct 6536 ATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAG 6595 Query 26789 CAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACC 26848 || ||||| | || || |||||||| | || ||||| || || || || || | | Sbjct 6596 GTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATC 6655 Query 26849 CA 26850 || Sbjct 6656 CA 6657 >seq4399 Length=42927 Score = 84.2 bits (92), Expect = 6e-12 Identities = 112/157 (71%), Gaps = 9/157 (6%) Strand=Plus/Plus Query 26610 CAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTC 26669 |||||||||| || ||||||||||||| |||||| || ||| | || | || | | Sbjct 12048 CAGCTTCCCATATTGGGTAAAAATGTAATCCGATCGCCGCAGAAGTAGGAATAACGACAC 12107 Query 26670 CTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTA 26729 | || || ||||||||||| | | |||||| || ||||| ||||||| | Sbjct 12108 CAGAGATAATATTGTTTCCACATAGTAACGAACCAGAAACAGGCTCAC---------AAA 12158 Query 26730 TATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 ||||||| | || || ||||||||||| | ||||| Sbjct 12159 TATCTACTTGAGGAGCAGCGATGAAGGCGATAATAAA 12195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147687648107360