Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq6788 132 1e-26 seq4399 89.7 1e-13 >seq6788 Length=15930 Score = 132 bits (146), Expect = 1e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 41325 CCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCT 41384 ||||| ||||||||||| || || | ||| || || ||||| |||||||| || ||||| Sbjct 6476 CCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCA 6535 Query 41385 ATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAAT 41444 |||||||| || || || ||||| |||||||| || || | || || || | ||| Sbjct 6536 ATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAG 6595 Query 41445 GCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACC 41504 | || ||||| | ||||||||||| || | ||| || || || ||||||||||| | | Sbjct 6596 GTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTTATC 6655 Query 41505 CAGTTACAAAA 41515 ||||| || || Sbjct 6656 CAGTTGCAGAA 6666 >seq4399 Length=42927 Score = 89.7 bits (98), Expect = 1e-13 Identities = 112/155 (72%), Gaps = 9/155 (6%) Strand=Plus/Plus Query 41268 GCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCA 41327 |||||||| |||||||| ||||||| |||||| || ||| | |||| || | ||| Sbjct 12050 GCTTCCCATATTGGGTAAAAATGTAATCCGATCGCCGCAGAAGTAGGAATAACGACACCA 12109 Query 41328 GATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATA 41387 || ||||||||||| || | | |||||| || ||||| ||||||| ||| Sbjct 12110 GAGATAATATTGTTTCCACATAGTAACGAACCAGAAACAGGCTCAC---------AAATA 12160 Query 41388 TCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||||| | || || ||||| |||||||| || || Sbjct 12161 TCTACTTGAGGAGCAGCGATGAAGGCGATAATAAA 12195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143678709132522