Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq6788 138 1e-27 seq4399 100 3e-16 seq6021 82.4 9e-11 seq414 82.4 9e-11 >seq6788 Length=15930 Score = 138 bits (152), Expect = 1e-27 Identities = 150/194 (77%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 68634 ACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATC 68693 |||||| || || ||||| ||||| || | ||||||| |||||| |||||||||||||| Sbjct 6475 ACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATC 6534 Query 68694 GATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTGCTG-CAAGC 68751 || || || || ||||||||||||||||||| || || || || ||||| | ||| Sbjct 6535 AATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGA-AGTTGCGGTCAATA 6593 Query 68752 AGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTC 68811 || ||||||||||||| || || ||||| || | |||||| || || || ||| ||| Sbjct 6594 AG-GTAGGGATCATCAAAACACCAAACCATCCGATGTAAAGACGATTTTCGGTGCTAGTT 6652 Query 68812 ACCCATTCGCAGAA 68825 | ||| | |||||| Sbjct 6653 ATCCAGTTGCAGAA 6666 >seq4399 Length=42927 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 66819 ACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAG 66878 || || ||||| | |||||||||||| ||||| | |||||| ||| |||| ||||||| Sbjct 11221 ACGGGTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAG 11162 Query 66879 ATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGA 66913 || || ||||| |||||||| |||||||||||||| Sbjct 11161 ATTTGGGACCAAAAGCGGTTAGCAGTAACCATTGA 11127 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/152 (72%), Gaps = 9/152 (6%) Strand=Plus/Plus Query 68574 TGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGC 68633 ||| |||||||| || || ||||| || | || || || ||| |||||| ||| | Sbjct 12046 TGCAGCTTCCCATATTGGGTAAAAATGTAATCCGATCGCCGCAGAAGTAGGAATAACGAC 12105 Query 68634 ACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATC 68693 |||||| || || ||||| ||| | || | ||||||| |||||| |||| |||| Sbjct 12106 ACCAGAGATAATATTGTTTCCACATAGTAACGAACCAGAAACAGGCTCACAAATA----- 12160 Query 68694 GATGTCCACAGGGGGAGCAGCGATGAAGGCGA 68725 || || | ||||||||||||||||||| Sbjct 12161 ----TCTACTTGAGGAGCAGCGATGAAGGCGA 12188 >seq6021 Length=23069 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| ||| ||| || |||||||| |||| |||||||| | |||||||| ||| ||| Sbjct 21347 AATCAAATA--TCCTCAAGTAGGATTCGAACATACGACCAGGCAATTAACAGCCGACAGC 21290 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 21289 TCTACCACTGAGCTACTGAGGA 21268 >seq414 Length=217443 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/79 (84%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 21273 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 21216 Query 35561 TCTGCCGCTGAGCTACTGA 35579 ||| || |||||||||||| Sbjct 21215 TCTACCACTGAGCTACTGA 21197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571955127109560