Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1091 113 9e-20 seq70 91.5 3e-13 seq1447 84.2 4e-11 >seq1091 Length=144125 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||| || | || || || | ||| | ||| || |||||| |||||| Sbjct 81920 ATTCCTCCTCGAAGGCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCA 81861 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| ||| |||| |||| || || ||||||||||| | |||||| || |||||| Sbjct 81860 GCCAATGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGTCTCTGCTGGTCAGGT 81801 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || |||||| || | || || || Sbjct 81800 GGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCAATTGTGTCAGAGCTCTCA 81741 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 81740 ACCTCAAGAGTTATGGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 81691 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || ||||| || | || | ||| | ||| | ||| || ||| || || ||| Sbjct 82148 ATCCCTCCCCTAAGGCGCAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCA 82089 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || || ||||||||||| | || || || || ||| Sbjct 82088 GCCAATGTGCGCCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGTCGTTGCTGGTCTGGT 82029 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || || ||||| ||| | || || || Sbjct 82028 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCTATCGTGTCAGAGCTCTCA 81969 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || |||||||| || || || ||||| | || || | ||| ||||||||| Sbjct 81968 ACCTCTAGAGTGATAGTCTTTCCAGTAAGGGTCTTCACAAAGATCTGCATT 81918 >seq70 Length=369686 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || || | | || | || | ||| | ||| || ||| ||||| ||| Sbjct 289248 ATACCACCCCTGAGCCTCAGCACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCA 289189 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | || || | || |||||||||||||| | || ||| ||||| || Sbjct 289188 GCAAGCGTCCTCCCGTCCTCAAGCTGCTTACCAGCAAAGATCAGTCGCTGCTGATCCGGA 289129 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || || ||| || ||||| || | ||| || || || Sbjct 289128 GGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCCGAGGACTCG 289069 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||||| || || | ||| |||||||| Sbjct 289068 ACCTCTAGGGTGATGGTCTTTCCAGTTAGGGTCTTCACAAAGATCTGCAT 289019 >seq1447 Length=121231 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || ||||| || | || | ||| | ||| | ||| || ||| || || ||| Sbjct 7692 ATCCCTCCCCTAAGGCGCAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCA 7633 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| || |||| || | || || ||||||||||| | || || || || ||| Sbjct 7632 GCCAATGTGCGCCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGTCGTTGCTGGTCTGGT 7573 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || || ||||| ||| | || || || Sbjct 7572 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCTATCGTGTCAGAGCTCTCA 7513 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || |||||||| || || || ||||| | || || | || ||||||||| Sbjct 7512 ACCTCTAGAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCATT 7462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984304884697050