Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1091 91.5 3e-13 seq3499 87.8 3e-12 seq654 87.8 3e-12 >seq1091 Length=144125 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||| ||| || | || || || | ||| | ||| || ||||| ||||| Sbjct 81920 ATTCCTCCTCGAAGGCGGAGGACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCA 81861 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | ||| | || |||| || || |||||||| || | |||||| ||||||||| Sbjct 81860 GCCAATGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAAGATGAGTCTCTGCTGGTCAGGT 81801 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || || || |||||| || || || || || Sbjct 81800 GGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCAATTGTGTCAGAGCTCTCA 81741 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||| | || || | || |||||||| Sbjct 81740 ACCTCAAGAGTTATGGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 81691 >seq3499 Length=58236 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||||| || | || |||| |||| || || |||||||| || | | | Sbjct 8342 ATGTTATAATCTGCCAAGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGC 8401 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || || || || || || ||| ||||| || || Sbjct 8402 TGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATTGTCGATGGTG 8461 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || || | ||| ||||| || ||||| | || || | |||||||||| Sbjct 8462 TCCGAGGACTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAATATCTGC 8521 Query 172068 ATT 172070 ||| Sbjct 8522 ATT 8524 >seq654 Length=182673 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||||| || | || |||| |||| || || |||||||| || | | | Sbjct 9294 ATGTTATAATCTGCCAAGGTGCGCCCGTCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGC 9353 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || || || || || || ||| ||||| || || Sbjct 9354 TGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATTGTCGATGGTG 9413 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || || | ||| ||||| || ||||| | || || | |||||||||| Sbjct 9414 TCCGAGGACTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAATATCTGC 9473 Query 172068 ATT 172070 ||| Sbjct 9474 ATT 9476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904978924961400