Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq5025 132 5e-26 seq1910 96.9 4e-15 >seq5025 Length=34140 Score = 132 bits (146), Expect = 5e-26 Identities = 226/328 (69%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 || |||||| | | | || || || |||||||| || ||||| | ||| | || || Sbjct 14216 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCTTT 14157 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 14156 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 14097 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || ||||| || | |||||||||||| | || ||| || || | || ||||| || Sbjct 14096 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCAGCGGTT 14037 Query 159486 TCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 159545 || || ||||| | | | | || ||| | | ||||| ||||| || || | || Sbjct 14036 TCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCACAA 13977 Query 159546 GGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGT 159605 ||| |||| || ||||| ||| | || || | |||| |||||| || || || || Sbjct 13976 GGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACATGGG 13917 Query 159606 GCCTTCGCCCTAATTGGTTTCATGCTCC 159633 || || || ||||| ||||||||| ||| Sbjct 13916 GCTTTTGCACTAATAGGTTTCATGTTCC 13889 >seq1910 Length=102200 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 || |||||| | | | || || || |||||||| || ||||| || ||| |||| || Sbjct 8353 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCTTT 8412 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 8413 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 8472 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTC 159485 || ||||| || | |||||||||||| | || ||| || || | || ||||| || Sbjct 8473 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCAGCGGTT 8532 Query 159486 TCGACGCCTGC 159496 || || ||||| Sbjct 8533 TCCACCCCTGC 8543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548279236477560