Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq5025 185 1e-41 seq1910 129 6e-25 seq4399 113 5e-20 seq6788 96.9 4e-15 >seq5025 Length=34140 Score = 185 bits (204), Expect = 1e-41 Identities = 248/339 (73%), Gaps = 6/339 (2%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || | ||||||||||||||||| || ||||| | Sbjct 14228 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAG 14170 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||||||| | ||| | || |||||| |||| ||||||||||| Sbjct 14169 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 14110 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTC 152536 | || ||||||||| || || || || ||||||||| |||| || |||| |||| Sbjct 14109 TGTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTC 14052 Query 152537 TTA-CTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 ||| | || || ||||| || || || || | | | || ||| | |||| || ||| Sbjct 14051 TTAACGGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGG 13992 Query 152596 GGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTT 152655 || || || || ||||||||||| | ||| ||| | || || || ||| ||||| Sbjct 13991 GGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 13932 Query 152656 GTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATG 152694 || || || || |||||||| || ||||| ||||||||| Sbjct 13931 GTTGCTCTACATGGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 129 bits (142), Expect = 6e-25 Identities = 156/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || | ||||||||||||||||| || ||||| || Sbjct 8341 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGG 8399 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||||||| | ||| | || |||||| |||| ||||||||||| Sbjct 8400 CCTATTACTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 8459 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGG-AGGGCGCAAACTTTC 152536 | || ||||||||| || || || || ||||||||| ||| ||| |||| |||| Sbjct 8460 TGTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTC 8517 Query 152537 TT-ACTGCGGCAGTTTCTACTCCAGC 152561 || || || || ||||| || || || Sbjct 8518 TTAACGGCAGCGGTTTCCACCCCTGC 8543 >seq4399 Length=42927 Score = 113 bits (124), Expect = 5e-20 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 153047 ATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATA 153106 |||| ||||||||||||||||| || |||||||| || ||||| |||||||| ||||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 153107 AACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGT 153143 |||| ||| | |||||||||||||| |||||||| || Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGT 11221 >seq6788 Length=15930 Score = 96.9 bits (106), Expect = 4e-15 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 || ||||| || |||| ||||| ||||| ||||||| || || | ||| | ||||| Sbjct 6639 AATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAAC- 6581 Query 150926 ATTTGC---TTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGT 150982 || | || || | || |||||||||||||| || || || || ||||| || ||| Sbjct 6580 --TTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 6523 Query 150983 GAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGT 151030 || || ||| |||||||| | | || || ||||| || ||||||||| Sbjct 6522 GAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGT 6475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549527019902760