Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq4371 87.8 2e-12 seq588 87.8 2e-12 >seq4371 Length=43324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 194229 TCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAA 194287 |||||| || ||||| |||| |||||||| ||| | || |||| ||| ||||||| Sbjct 39047 TCAGTT-CGCATACCACAAATTGGGGATAAGTTTAGCAGTAGACATGG-TCAGAAAGGAA 38990 Query 194288 CTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAG 194347 || ||| |||| || ||||||| || ||||||| || | | ||| || ||| | Sbjct 38989 CTGTTGGAATGACATACACACAAGAGGACATGCCATGGACGATTGAAGGCATCACACCTG 38930 Query 194348 ATATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTGCTA 194407 |||| ||| | |||||| || |||||| ||| | ||||| ||| || | |||| Sbjct 38929 ATATCATTGTGAATCCACATGCTATTCCATCCCGTATGACTATTGGGCAGCTGATTGAGT 38870 Query 194408 CTGTTATGGGTAAA 194421 | ||||||||||| Sbjct 38869 GTATTATGGGTAAA 38856 >seq588 Length=189753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 194229 TCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAA 194287 |||||| || ||||| |||| || ||||| ||| | || |||| ||||||||||| Sbjct 165736 TCAGTT-CGCATACCACAAATTGGTGATAAGTTTAGCAGTAGACATGG-TCAAAAAGGAA 165793 Query 194288 CTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAG 194347 || ||| |||| || | ||||| || ||||||| |||| | ||| || ||| | Sbjct 165794 CTGTTGGAATGACATACACGCAAGAGGACATGCCATGGACAATTGAAGGCATCACACCTG 165853 Query 194348 ATATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTGCTA 194407 |||| ||| | |||||| || |||||| ||| | ||||| ||| || | |||| Sbjct 165854 ATATCATTGTGAATCCACATGCTATTCCATCCCGTATGACTATTGGGCAGCTGATTGAGT 165913 Query 194408 CTGTTATGGGTAAA 194421 | ||||||||||| Sbjct 165914 GTATTATGGGTAAA 165927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 194229 TCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAA 194287 |||||| || ||||| |||| || ||||| ||| | || |||| ||||||||||| Sbjct 167252 TCAGTT-CGCATACCACAAATTGGTGATAAGTTTAGCAGTAGACATGG-TCAAAAAGGAA 167309 Query 194288 CTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAG 194347 || ||| |||| || | ||||| || ||||||| |||| | ||| || ||| | Sbjct 167310 CTGTTGGAATGACATACACGCAAGAGGACATGCCATGGACAATTGAAGGCATCACACCTG 167369 Query 194348 ATATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCATTAATCAAATTATTGCTA 194407 |||| ||| | |||||| || |||||| ||| | ||||| ||| || | |||| Sbjct 167370 ATATCATTGTGAATCCACATGCTATTCCATCCCGTATGACTATTGGGCAGCTGATTGAGT 167429 Query 194408 CTGTTATGGGTAAA 194421 | ||||||||||| Sbjct 167430 GTATTATGGGTAAA 167443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632379839336040