Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq663 91.5 1e-13 seq1562 86.0 5e-12 seq70 86.0 5e-12 seq2503 82.4 6e-11 seq654 82.4 6e-11 >seq663 Length=181307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || || || ||||| ||| | || |||| || Sbjct 106031 ATGCAGATCTTCGTCAAGACCCTGACTGGTAAGACCATCACCCTGGAGGTGGAGTCTTCT 105972 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 105971 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 105912 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || || ||||||||||||| | | || |||||||||||||| Sbjct 105911 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGATTACAAC 105852 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || ||||| || | ||| ||||| Sbjct 105851 ATCCAGAAGGAATCCACTCTCCACCTGGTG 105822 >seq1562 Length=116030 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || || || ||||| ||| | || |||| || Sbjct 82758 ATGCAGATCTTCGTCAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 82699 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 82698 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 82639 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || || ||||||||||||| | | || ||||||| |||||| Sbjct 82638 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGACTACAAC 82579 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || ||||| || | ||| ||||| Sbjct 82578 ATCCAGAAGGAATCCACTCTCCACCTGGTG 82549 >seq70 Length=369686 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || |||||| | |||||||| || || ||| | || ||| | Sbjct 289931 ATGCAGATTTTCGTGAAAACTCTGACCGGCAAGACAATCACCCTGGAGGTTGAGTCATCT 289990 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| ||||| || ||| | || ||| ||| Sbjct 289991 GATACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAA 290050 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||||||||||| | || ||||||| || ||| Sbjct 290051 CAGCGCCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGTCGTACGCTGGCGGACTATAAC 290110 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| | ||| ||||| Sbjct 290111 ATTCAGAAGGAGTCTACCCTTCACCTGGTG 290140 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| || |||||||| || | |||||||| || || || | || ||| ||| | Sbjct 289247 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACGATCACTCTTGAGGTCGAGTCCTCA 289306 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | | || || ||||||| ||||| || ||| | || ||| || Sbjct 289307 -GACACTATCGACAATGTTAAGGTGAAGATTCAAGACAAGGAGGGCATCCCACCGGACCA 289365 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | ||| || || || || ||||||| | |||| |||| |||||||| Sbjct 289366 GCAGCGTCTCATCTTTGCCGGCAAGCAACTTGAGGATGGCCGAACTCTGGCTGATTACAA 289425 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| ||||| || || Sbjct 289426 CATTCAGAAAGAGTCCAC 289443 >seq2503 Length=81757 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | || || || ||||| ||| | || |||| || Sbjct 17956 ATGCAGATCTTTGTCAAGACCCTGACTGGTAAGACCATCACCCTGGAGGTGGAGTCTTCT 18015 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 18016 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 18075 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || || ||||||||||||| | | || ||||||| |||||| Sbjct 18076 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGACTACAAC 18135 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| | ||| Sbjct 18136 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 18165 >seq654 Length=182673 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 110355 AGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTA 110414 ||| |||| || || ||||| | ||| ||| || || | ||||| | ||| || | Sbjct 6860 AGAGGATTCAAGAAAAGGAAGGAATTCCCCCGGACCAGCAGCGCCTTATCTTTGCTGGGA 6801 Query 110415 AACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGC 110474 | ||||||||||||||| |||| |||| |||||||||||||| || | || || ||| Sbjct 6800 AGCAGCTGGAGGATGCCTTAACACTGGCTGATTACAACATTCAGAAGCACTCCACTCTGC 6741 Query 110475 ACATGGTGTTAAGACTGCGAGGGGG 110499 || | || || | ||||| || || Sbjct 6740 ACCTTGTCTTGCGTCTGCGTGGTGG 6716 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | |||||||| ||||| ||| | || |||| | Sbjct 9931 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 9872 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||| ||||| ||||| | || ||| || Sbjct 9871 GATACAATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGTATTCCGCCGGACCAG 9812 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||||| | ||| || || ||||| ||||||| || || |||| ||||||||| Sbjct 9811 CAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTGGCTGATTACAAC 9752 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || || || || || |||| Sbjct 9751 ATCCAGAAGGAGTCCACCCTGCA 9729 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | |||||||| ||||| ||| | || |||| | Sbjct 10159 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 10100 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||||| ||||| ||||| | || ||| || Sbjct 10099 GATACAATCGACAATGTCAAGGCAAAGATCCAGGACAAGGAAGGTATTCCGCCGGACCAG 10040 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||||| | ||| || || ||||| ||||||| || || |||| ||||||||| Sbjct 10039 CAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTGGCTGATTACAAC 9980 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || || || || || |||| Sbjct 9979 ATCCAGAAGGAGTCCACCCTGCA 9957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412771747588319