Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_022094.1 Length=14319 Score E Sequences producing significant alignments: (Bits) Value seq13765 168 6e-38 seq13747 78.8 8e-11 >seq13765 Length=656 Score = 168 bits (186), Expect = 6e-38 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 8123 TGGGTTGCGGTTCACATCGGGATTCCGTTCGGGGTCAACTGGTCCGAGTGGGAGACCTGA 8182 ||| ||||| |||||| |||| ||| | || || || || || ||||||||||| || Sbjct 516 TGGTTTGCGATTCACAAGCGGATACCGCCCCGGTTCTACCGGACCAAGTGGGAGACCGGA 457 Query 8183 TAGCCATTCCCAAGGCATGGCTATGGATTTTGCGGGAAGTAAAGCACAAATGAAACAATT 8242 ||||||||||||||||||||||||||| || ||||| |||| ||||| | |||| Sbjct 456 TAGCCATTCCCAAGGCATGGCTATGGACTTCGCGGGTTCAAAAGATAAAATGGACGAATT 397 Query 8243 TTCCGAGTGGGCGAAAATGACAGGACTCTTTACAGAAGTGTTGTATGAGACGGCGGGTCA 8302 | | | |||||||||| | || || ||||| |||||||| | | ||||| || || Sbjct 396 TGCAAAATGGGCGAAAACGTCACCGCTATTTACGGAAGTGTTATGGCAAACGGCTGGGCA 337 Query 8303 TTACGATCATGTCCATGTCGGATGGCAAACTGGAAAACACCCTGACGGAAA 8353 ||||||||||| || ||||| |||||| |||||||||| | |||||| Sbjct 336 CTACGATCATGTACACGTCGGGTGGCAAGAGGGAAAACACCAAGCCGGAAA 286 >seq13747 Length=1152 Score = 78.8 bits (86), Expect = 8e-11 Identities = 117/163 (72%), Gaps = 15/163 (9%) Strand=Plus/Plus Query 2798 TTTACTATATTTGTACCAAAATTCATGATGTGGAAAG---CATCAAGACCGAAGA----- 2849 ||||| || ||||||||||||||| |||||||||| | || || || |||| Sbjct 838 TTTACAATCTTTGTACCAAAATTCTTGATGTGGAATGCCACACGAAAACAAAAGAAAGCG 897 Query 2850 -AGGAGGGAACGCATTATGCTAGACCAAATCAAAGTACC--AAACGAGAACAAGGGAAGC 2906 ||| || ||| ||||||||| ||||| |||| |||| ||||| | ||||| | Sbjct 898 CAGGTGGTAACAAATTATGCTAAACCAATTCAACCTACCGGAAACG---CCGGGGGAAAC 954 Query 2907 -AAACAGGAGAGGTTGCAGCTGGTAGTGGACCAAGTGGTGGAC 2948 ||||| ||||| || | | |||| |||||||||| | ||| Sbjct 955 AAAACAAGAGAGACTGGAACAAGTAGCGGACCAAGTGCTAGAC 997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 45695063750778