Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_022771.1 Length=156648 Score E Sequences producing significant alignments: (Bits) Value seq9888 187 2e-42 >seq9888 Length=2405 Score = 187 bits (206), Expect = 2e-42 Identities = 272/382 (71%), Gaps = 13/382 (3%) Strand=Plus/Minus Query 140485 GCAAAGACAGAACTTACAACTACACTAGAAAGAATGATCTA---TGC--CAACACCTGCA 140539 || || |||| | | |||||| | |||||||| ||| || ||| ||| | | Sbjct 2215 GCTAAAACAGCATTAACAACTCAATTAGAAAGACAGATATACTTTGCTACAAAA-----A 2161 Query 140540 AGATGGGGGTGTTTGGCTGCTTTGAAGTAACCATAGGTATGGGTGGTAGCGAGCGGGTAG 140599 ||||||| || ||||| || |||||||| || || || | ||| | || || || | Sbjct 2160 AGATGGGTGTCTTTGGTTGTTTTGAAGTCACTATTGGATTTAATGGAAATGAACGAGTCG 2101 Query 140600 ATTATATCACTTACGACACAAAAGGGATATGGCGCTGCTATGAAATCAAGGTGTCAGTAG 140659 ||||||| ||||||||||| || || || ||||| ||||||||||| || || ||| | | Sbjct 2100 ATTATATGACTTACGACACTAAGGGTATTTGGCGATGCTATGAAATTAAAGTTTCACTTG 2041 Query 140660 CCGACTTTAGGAGTACAGCTAAGAAGACCTTCTGTGGTCATTATAACTACTATGTGATGC 140719 | || ||||| |||| ||| ||||| || || || || |||| ||| |||| ||| |||| Sbjct 2040 CTGATTTTAGAAGTAAAGCAAAGAAAACTTTTTGCGGACATTTTAATTACTTTGTAATGC 1981 Query 140720 CTAAGGAGCTTTATGATAAAGTAAAAGATGAGGTACCTGCACATATAGGAGTTTATATTG 140779 |||| || | | ||| || || |||||||| | || | ||| |||| |||||| || Sbjct 1980 CTAAAGAATTATTTGAGAAGGTTAAAGATGAAATCCCATCTCATGTAGGTGTTTATGTTA 1921 Query 140780 ATGGTAGATACTCCATTAAGAGAGCTAAGAAGCAAGAGTTATCCGTAGACGAGCAGGTAC 140839 | | || | |||||| ||| || |||||| || ||| || || ||| | ||| Sbjct 1920 ACG---GAATGTGTGTTAAGAAAGCCAAAAAGCAAAAGCTATTAGTGGAAGAGAAAGTAT 1864 Query 140840 TTAAAGACTCTCTTATTCGATC 140861 | ||||| || | |||||||| Sbjct 1863 TAAAAGATTCATTGATTCGATC 1842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501058632445440