Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_023007.1 Length=168876 Score E Sequences producing significant alignments: (Bits) Value seq9885 176 5e-39 >seq9885 Length=2412 Score = 176 bits (194), Expect = 5e-39 Identities = 209/284 (74%), Gaps = 11/284 (4%) Strand=Plus/Minus Query 107235 CACCACTTAGAGAGTAGCAGATTTCAATTCCGATAGACTTCATATTACCGTTTCCAGTTC 107294 ||||| || ||||| |||||||||| |||||||| || || ||||| ||| | Sbjct 2060 CACCAGATAATGAGTAACAGATTTCAACACCGATAGATTTTCGGTTTCCGTTACCACCAC 2001 Query 107295 CATCTCCACAATGCCAAGCATTACGGTTTGTAGGGATACCTTGAACAACTTCGAAATCAT 107354 |||| |||||||||||||||||||| | || |||||||||| |||||||| ||||| Sbjct 2000 CATCACCACAATGCCAAGCATTACGATCAACCGGAATACCTTGAATAACTTCGATATCAT 1941 Query 107355 CAACTGCAAAATGGAATGAAGTAGCATTACTGTTTGTAATCATGTACTGCACCTCGTTAT 107414 | ||||| || ||||||||| ||| | | |||||||| | |||||||| | Sbjct 1940 CTACTGCGAAGTGGAATGAA-----ATTTCCG------ATCATGTAATTTACCTCGTTCT 1892 Query 107415 TCGCACTTGCATCATTGTAAGTATTGTGGATAGTAATGTATTCTGCTGTCATAGTGTTAG 107474 | ||| |||||||| ||||| || || | |||||||| |||||| |||||| | || Sbjct 1891 TAGCAGGCGCATCATTATAAGTGTTATGCACTGTAATGTACTCTGCTTTCATAGAATAAG 1832 Query 107475 GACACTTTAAGCTGTACTTACTTGAATCCACCAATTTTTGTCTT 107518 ||||||| | ||| || |||| | |||| | |||||| || Sbjct 1831 GACACTTGATTGGGTATTTGCTTGTAGCCACAAGATTTTGTTTT 1788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540181441992480