Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1091 95.1 1e-14 seq1415 89.7 4e-13 seq2503 86.0 5e-12 seq654 84.2 2e-11 seq3204 82.4 6e-11 seq2826 82.4 6e-11 seq1562 82.4 6e-11 seq70 82.4 6e-11 >seq1091 Length=144125 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| ||||| | || ||||| ||||| || |||| ||| | Sbjct 80803 ATGCAGATCTTTGTTAAAACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGAGTTCT 80862 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || || |||||| ||||| || ||| | ||| ||| ||| Sbjct 80863 GATACTATTGACAATGTTAAGGCCAAGATTCAGGATAAGGAGGGCATCCCCCCGGACCAG 80922 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || || || ||||| | ||| |||| ||||||||| Sbjct 80923 CAGAGGCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGTACATTGGCTGACTACAAC 80982 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||||||||| Sbjct 80983 ATCCAAAAGGAGTCTAC 80999 >seq1415 Length=123309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| | || |||| || Sbjct 101063 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCTTCT 101122 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 101123 GACACTATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCGGACCAG 101182 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||||||||||| | || | || ||||||||| Sbjct 101183 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCTGACTACAAC 101242 Query 107736 ATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 101243 ATCCAGAAGGAGTCCAC 101259 >seq2503 Length=81757 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || || || ||||| ||| | || |||| || Sbjct 17956 ATGCAGATCTTTGTCAAGACCCTGACTGGTAAGACCATCACCCTGGAGGTGGAGTCTTCT 18015 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 18016 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 18075 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| || || ||||||||||| | | || |||||||||||||| Sbjct 18076 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGACTACAAC 18135 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| | ||| Sbjct 18136 ATCCAGAAGGAGTCCACCCTCCACCTTGTG 18165 >seq654 Length=182673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || ||||| | ||| ||| |||||| | ||||| | ||| || || ||||||||| Sbjct 6849 GAAAAGGAAGGAATTCCCCCGGACCAGCAGCGCCTTATCTTTGCTGGGAAGCAGCTGGAG 6790 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || ||| |||| |||| || ||||||||||| ||| | || || ||||| | || ||| Sbjct 6789 GATGCCTTAACACTGGCTGATTACAACATTCAGAAGCACTCCACTCTGCACCTTGTCTTG 6730 Query 107769 AGATTGCGAGGGGG 107782 | |||| || || Sbjct 6729 CGTCTGCGTGGTGG 6716 >seq3204 Length=64717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || |||| || || ||||| ||| | || |||| || Sbjct 383 ATGCAGATCTTCGTCAAGACCCTAACTGGTAAGACCATCACCCTGGAGGTGGAGTCTTCT 442 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || || || ||| | ||| || ||| Sbjct 443 GACACAATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 502 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| || || || |||||||| | || |||||||||||||| Sbjct 503 CAGCGTCTTATCTTTGCCGGCAAGCAACTGGAGGATGGACGTACCCTGGCGGACTACAAC 562 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||| || || | ||| ||||| Sbjct 563 ATCCAGAAGGAATCCACTCTCCACTTGGTG 592 >seq2826 Length=73584 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || ||||||||||| ||| | || |||| || Sbjct 56675 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGTCTTCT 56734 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 56735 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 56794 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||| ||||| | | || | || ||||||||| Sbjct 56795 CAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCTGACTACAAC 56854 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 56855 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 56884 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || ||||| ||||| ||| | || |||| || Sbjct 58220 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 58279 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | || ||| ||| Sbjct 58280 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 58339 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||| ||||| | | || | || ||||||||| Sbjct 58340 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTACAAC 58399 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 58400 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 58429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || ||||| ||||| ||| | || |||| || Sbjct 58448 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 58507 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | || ||| ||| Sbjct 58508 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 58567 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||| ||||| | | || | || ||||||||| Sbjct 58568 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTACAAC 58627 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 58628 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 58657 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || ||||| ||||| ||| | || |||| || Sbjct 58676 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 58735 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | || ||| ||| Sbjct 58736 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 58795 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||| ||||| | | || | || ||||||||| Sbjct 58796 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCTGACTACAAC 58855 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 58856 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 58885 >seq1562 Length=116030 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || | || || || ||||| ||| | || |||| || Sbjct 82758 ATGCAGATCTTCGTCAAGACGCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 82699 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 82698 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 82639 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||| | ||| || || ||||||||||| | | || |||||||||||||| Sbjct 82638 CAGCGTCTTATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGTACCCTGGCGGACTACAAC 82579 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||| || || | ||| ||||| Sbjct 82578 ATCCAGAAGGAATCCACTCTCCACCTGGTG 82549 >seq70 Length=369686 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || |||||| | || ||||| || || ||| | || ||| | Sbjct 289931 ATGCAGATTTTCGTGAAAACTCTGACCGGCAAGACAATCACCCTGGAGGTTGAGTCATCT 289990 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || || || ||| | || ||| || Sbjct 289991 GATACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAA 290050 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| ||||| ||||||||||| | || |||||||||| ||| Sbjct 290051 CAGCGCCTGATCTTTGCCGGTAAGCAGCTGGAGGATGGTCGTACGCTGGCGGACTATAAC 290110 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| ||||||||||| | ||| ||||| || Sbjct 290111 ATTCAGAAGGAGTCTACCCTTCACCTGGTGCTG 290143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398809310419387