Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq5025 163 3e-35 seq1910 113 5e-20 seq4399 89.7 6e-13 >seq5025 Length=34140 Score = 163 bits (180), Expect = 3e-35 Identities = 241/338 (71%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | ||||||||| | | |||| |||||||||||||| || ||||| | Sbjct 14228 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGC 14169 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 14168 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 14109 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGT-GCAAACTTTCT 158953 | || |||||||| |||||| | |||| ||||||| | || ||| |||| ||||| Sbjct 14108 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 14051 Query 158954 TA-CAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 159012 || | ||||| ||||| || || || || | | | || ||| | |||| || |||| Sbjct 14050 TAACGGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 13991 Query 159013 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTG 159072 | || || || ||||||||||| | ||| ||| | || || || |||| ||||| Sbjct 13990 GACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 13931 Query 159073 TGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATG 159110 | || || || || || ||||| ||||| ||||||||| Sbjct 13930 TTGCTCTACATGGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 113 bits (124), Expect = 5e-20 Identities = 150/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | ||||||||| | | |||| |||||||||||||| || ||||| || Sbjct 8341 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 8400 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 8401 CTATTACTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 8460 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTG-AGGGTGCAAACTTTCT 158953 | || |||||||| |||||| | |||| ||||||| | | ||| ||||| ||||| Sbjct 8461 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 8518 Query 158954 T-ACAGCAGCAGTTTCGACTCCAGC 158977 | || ||||| ||||| || || || Sbjct 8519 TAACGGCAGCGGTTTCCACCCCTGC 8543 >seq4399 Length=42927 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 159463 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACA 159522 |||| ||||| ||||| |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 159523 AGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATG 159571 | || ||| | |||||||||||| | ||||| || || | ||| |||| Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATG 11233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545178974582640