Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq5025 150 2e-31 seq1910 113 5e-20 seq300 105 8e-18 seq2985 91.5 2e-13 >seq5025 Length=34140 Score = 150 bits (166), Expect = 2e-31 Identities = 231/327 (71%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 |||| |||||| | |||| || || || ||||| || ||||| | || | || Sbjct 14218 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCT 14159 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| ||||| ||||||| || || Sbjct 14158 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 14099 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 179127 |||| |||||||| | |||||||||||| | |||||| || |||||| |||||||| Sbjct 14098 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCG 14040 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 14039 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCA 13980 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || ||| |||| || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 13979 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACAT 13920 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATG 179274 || || || || ||||| || |||||| Sbjct 13919 GGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 |||| |||||| | |||| || || || ||||| || ||||| || || |||| Sbjct 8351 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCT 8410 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| ||||| ||||||| || || Sbjct 8411 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 8470 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 179127 |||| |||||||| | |||||||||||| | |||||| || |||||| |||||||| Sbjct 8471 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCG 8529 Query 179128 GTCTCGACGCCTGC 179141 || || || ||||| Sbjct 8530 GTTTCCACCCCTGC 8543 >seq300 Length=244684 Score = 105 bits (116), Expect = 8e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||| ||||||||||| || || ||| | || | || ||||| || || ||||| Sbjct 146224 TACATCCTCGATGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGG 146165 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || || |||||||| ||||||||| | | | || ||||||||||| || || Sbjct 146164 GCTTGCTCTACCTGCGCTGGTAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCC 146105 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||| ||||||| || || | ||| | | | |||| ||||| | ||||||| Sbjct 146104 TTCCTCGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGCGTGTCGTACCCCAAG 146045 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 || |||||| | || | ||| | ||||| | || || |||| Sbjct 146044 TCTGATTGTGTCATCCACACTCACAAAGAAGGTGACCTGTACT 146002 >seq2985 Length=69808 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||| || |||||||| || || ||| | || | || ||||| || || ||||| Sbjct 54249 TACATCCTCGACGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGG 54308 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 || || || ||||| ||||| ||| | | | || ||||||||||| || || Sbjct 54309 GCTTGCTCCACCTGCGCTGGCAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCC 54368 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 ||||||||||||| || || | ||| | | | |||| ||||| | ||||||| Sbjct 54369 TTCCTTGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGCGTGTCGTACCCCAAG 54428 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACT 138760 || || ||| | || | ||| | ||||| | || || |||| Sbjct 54429 TCTGACTGTGTCATCCACACTCACAAAGAAGGTGATCTGTACT 54471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605562094028280