Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_023599.1 Length=38772 Score E Sequences producing significant alignments: (Bits) Value seq9885 116 9e-22 >seq9885 Length=2412 Score = 116 bits (128), Expect = 9e-22 Identities = 170/241 (71%), Gaps = 12/241 (5%) Strand=Plus/Plus Query 20126 AAGTGCCCTTATACAATGAATCCAGAATTTATCACAGTCCACAATACGTATAATGATGCG 20185 ||||| |||||| | ||||| |||| | || ||||| || || || |||||||||||| Sbjct 1825 AAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATAACACTTATAATGATGCG 1884 Query 20186 CCAGCTGAGAATGAAATTGCTTATATGATACGAAATAATAATGAGGTGTCATTCCACATT 20245 || ||| |||| || | ||| ||||| |||| | ||||||||| | Sbjct 1885 CCTGCTAAGAACGAGGTAAATTACATGATCGGAAA-----------TTTCATTCCACTTC 1933 Query 20246 GCAGTAGACGATAAAGAAGCTGTACAAGGCTTACCTTTAGAACGAAATGCATGGGCTTGT 20305 |||||||| |||| |||| | | ||||| | || | || || ||||| ||| |||| Sbjct 1934 GCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATCGTAATGCTTGGCATTGT 1993 Query 20306 GGAGATGGGAATGGTTCAGGCAACAAGAAAGTCGATTGGTGTGGAAATCTGTTATTCTTT 20365 || ||||| |||| || ||| |||| || || ||||| ||||||||||| || || Sbjct 1994 GGTGATGGTGGTGGTAACGGAAAC-CGAAAATCTATCGGTGTTGAAATCTGTTACTCATT 2052 Query 20366 A 20366 | Sbjct 2053 A 2053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123928365723364