Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2233 100 3e-16 seq737 96.9 3e-15 seq159 96.9 3e-15 seq837 95.1 1e-14 seq70 84.2 2e-11 seq3499 82.4 7e-11 seq654 82.4 7e-11 >seq2233 Length=91068 Score = 100 bits (110), Expect = 3e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 |||||||||| ||| || ||||| || ||||||||||| ||| | ||| ||| ||||| Sbjct 79825 ACTAAATGAAGTGTCGACTCTTTCTGAATGTTGTAATCAGCT-AATGTCCTCCCATCTTC 79767 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 | ||| ||||||||| | ||||| | |||||| || ||||| |||||||| ||||| Sbjct 79766 CAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGAATGCCTTCCTTGTC 79710 >seq737 Length=174138 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 151105 ATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGC 151164 ||| ||||||||||||| |||||| || || || | || | |||||| || ||||| || Sbjct 55620 ATCTGCCAAACCTTGAACGCCTATCCCAATAGGCCTGTGCCTCATATTTGACTTTTTGGC 55561 Query 151165 AGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 151205 ||||||||||||||| ||||| |||||| ||||| |||| Sbjct 55560 AGTTTCAATAGGGTAATAATTGATATCAATGATTTTGTTCA 55520 >seq159 Length=296457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 93/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||||| ||| || ||||| || ||||||||||| ||| | ||| ||| ||||| Sbjct 19305 ACCAAATGAAGTGTCGACTCTTTCTGAATGTTGTAATCAGCT-AATGTCCTCCCATCTTC 19363 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 | ||| ||||||||| | ||||| | |||||| || ||||| |||||||| ||||| Sbjct 19364 CAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGAATGCCTTCCTTGTC 19420 >seq837 Length=163444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 151096 AACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGA 151155 || ||| | ||| ||||||||||||| |||||| || || || | || | |||||| || Sbjct 143097 AATAAAAGTATCTGCCAAACCTTGAACGCCTATCCCAATTGGCCTGTGCCTCATATTTGA 143156 Query 151156 tttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 151205 || |||||||||||||||||||| |||| |||||| ||||| |||| Sbjct 143157 CTTCTTTGCAGTTTCAATAGGGTAATAATTAATATCAATGATTTTGTTCA 143206 >seq70 Length=369686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 137214 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 137273 ||| || ||||| || ||||||||||| || || | || || ||||| || || Sbjct 289444 TGTGGACTCTTTCTGAATGTTGTAATCAGCCAGAGTTCGGCCATCCTCAAGTTGCTTGCC 289385 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||| ||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 289384 GGCAAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGAATCTTCACCTT 289325 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||||| || || || |||| ||| | |||||||||||| | || Sbjct 289324 AACATTGTCGATAGTGTCTGAGGACTCGACCTCAAGAGTGATCGTCTTGCCGGTGAGGGT 289265 Query 137394 TTTTACGAATATTTGCATA 137412 || || || || |||||| Sbjct 289264 CTTGACAAAAATCTGCATA 289246 >seq3499 Length=58236 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || | || | || || || || || ||||||||||| Sbjct 8980 GCCACCGCGCAGACGCAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 9039 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || | || | || ||||| || || |||||| ||||||| || ||||| || |||| Sbjct 9040 AAGAGTTCGTCCA-TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAG 9098 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || || |||||||| ||| ||| || | | || | |||||||| | || | Sbjct 9099 GAATACCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCTGATGACTCCA 9158 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| || | |||||||| || | || || || ||||| ||||| Sbjct 9159 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 9207 >seq654 Length=182673 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || | || | || || || || || ||||||||||| Sbjct 10616 GCCACCGCGCAGACGCAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 10675 Query 137244 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | || | || | || ||||| || || |||||| ||||||| || ||||| || |||| Sbjct 10676 AAGAGTTCGTCCA-TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAG 10734 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || || |||||||| ||| ||| || | | || | |||||||| | || | Sbjct 10735 GAATACCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATCGTGTCTGATGACTCCA 10794 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| || | |||||||| || | || || || ||||| ||||| Sbjct 10795 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 10843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488459219295600