Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq11880 266 1e-65 seq13288 134 4e-26 >seq11880 Length=1288 Score = 266 bits (294), Expect = 1e-65 Identities = 397/570 (70%), Gaps = 25/570 (4%) Strand=Plus/Minus Query 54408 TTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGTTTACTTAAACATC 54467 |||||||| |||||| ||||| ||| || || || ||||||| |||||||||||| Sbjct 1028 TTCTCTTACATTAATCAACTTGGACAACGACCGGGTGCCGGAGCTGCATACTTAAACATC 969 Query 54468 TTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGCTGATGAAAAAGCC 54527 ||||| ||||| | ||||||||| | ||| | ||||| | ||||| ||||| || | Sbjct 968 TTCCATTGGGACTTAATTGAATTCCTTGATTCAAAAAAAGTAAATGCCGATGAGAAGACA 909 Query 54528 AGAATTCAATCTTTATCTATTGGATTAATTGCTGAAAAAATCTTCTTCCAATTAGCAAAA 54587 | |||||||||||||||||||||||| || | | || |||||||| ||| Sbjct 908 CGTATTCAATCTTTATCTATTGGATTAGTTACACCGAGAAAGTTCTTCCAGTTA------ 855 Query 54588 AGAAACGAAGAAATGTATGTTTTTGCTCCTCACTCGGTTTACAGAGCTTATGGTGAACAT 54647 | ||||| ||| | ||||| | ||||||||| | || Sbjct 854 -------------------TATTTGCACCTGCTACTGTTTATAAAGCTTATGGAGTTCAC 814 Query 54648 TTAGATGACATGGATTTAAATGTTATGTATGATAAGTTAGTTAAAAACCCAGCTGTTAAG 54707 |||| || ||||||||| ||| | ||||| |||||||| |||||| ||| Sbjct 813 CTAGACGATATGGATTTAGATGAGAAATATGACGAGTTAGTTGCAAACCCTATGGTTCGT 754 Query 54708 AAACGTAAGTTAAATTTAACTGCTCGCGAAATGCTTATTAAAATTGCTATTATTCAATTA 54767 |||||||||||| | | || ||||| || ||| | |||| || || | ||||||||| Sbjct 753 AAACGTAAGTTAGACCTTACAGCTCGTGAGATGTTAGTTAAGATCGCAACGATTCAATTA 694 Query 54768 GAATCTGGCTACCCTTATTTTATGTACAAAACTAACGCTAATGATACTCACGCATTAAAA 54827 ||||||||||| |||||||||||| | ||||| ||||| ||||| || |||||||| Sbjct 693 GAATCTGGCTATCCTTATTTTATGAATAAAACAAACGCGAATGAACAACATCCATTAAAA 634 Query 54828 GATATTGGCCAAGTTAAAATGAGTAATCTTTGTACGGAAATCTTCCAATTACAAGAGACA 54887 ||| | ||| ||||||||| |||||||||||| || || || || | |||||| Sbjct 633 GATTTAGGCGGCGTTAAAATGTCTAATCTTTGTACTGAGATTTTTCAGTATATGGAGACA 574 Query 54888 TCTACTATTAATAACTATGGTACTGATGATGAAATCAAGAGAGATATCAACTGTAATTTA 54947 ||||| | || || | || ||||||| ||||| ||| ||| Sbjct 573 AGCGTAATTAACGATTACAATATCGCGGACTGGATCAAGAATGATATTTCTTGTGTATTA 514 Query 54948 GGTTCATTAAATATTGTTAATGTAATGGAA 54977 |||||| |||| ||||| |||||||||||| Sbjct 513 GGTTCACTAAACATTGTAAATGTAATGGAA 484 >seq13288 Length=1052 Score = 134 bits (148), Expect = 4e-26 Identities = 86/91 (95%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 60123 GGAGGGTTACTCTAATTGGTAAGAGAACAGTCTTGAAAACTGTCGTAGGTATAAAAGCCG 60182 |||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||| Sbjct 941 GGAGGGTTACTCTAATTGGTAAGAGATCAGTCTTGAAAACTGACGTAGG-GTAAAA-CCG 884 Query 60183 ATGGGGGTTCGAGTCCCTCACCCTCCGCCAT 60213 ||||||||||||||||||||||||||||||| Sbjct 883 ATGGGGGTTCGAGTCCCTCACCCTCCGCCAT 853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591627237445184