Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_024137.1 Length=152778 Score E Sequences producing significant alignments: (Bits) Value seq10635 221 1e-52 seq9627 214 2e-50 >seq10635 Length=1693 Score = 221 bits (244), Expect = 1e-52 Identities = 469/699 (67%), Gaps = 32/699 (5%) Strand=Plus/Minus Query 93188 TGGATGGAAGAGAGAACAATCTTATTAACACCGTATGGTAGCCGTTTATACGGAACGGAC 93247 ||| | ||||| ||||||||| | || | || ||||| | || ||||| || Sbjct 1361 TGGTTAGAAGATAGAACAATCCTCTTGTCTCCTACAGGTAGTTATGCCTATGGAACAGAT 1302 Query 93248 ACAGAGAACTCGGATTGGGATTTCAAAGGAGTTTGTATCCCACCAAAAGAGTACTTCTTA 93307 ||||| | || ||| ||| | || || || || ||||||||| ||||| | |||| Sbjct 1301 ACAGATACATCAGATAAGGACTATAAGGGTGTATGCATCCCACCAGTTGAGTATTACTTA 1242 Query 93308 GGACTAGAGACATTTAATGAGTATAACAACACTGGTGGTAAAACATTCAAGAACACGAAG 93367 || | || ||||||||||||| |||| | |||||||||| |||| ||||||||| Sbjct 1241 GGTTTGGATTCATTTAATGAGTACAACACATCAGGTGGTAAAAACTTCAGAAACACGAAG 1182 Query 93368 GACGATGTTGACATCAATATCATTCATGTAAGTAAGTTCGTAAAAGATGCTATGCACGGA 93427 || ||||| || | || ||||||||||| | ||||| || | |||||||||||| | Sbjct 1181 GATGATGTCGATGTAAACATCATTCATGTGAACAAGTTTGTTAGAGATGCTATGCAAAGC 1122 Query 93428 GTACCGAATAACATCGAAGTATTATTTGCTAGAGAGCAAGACTATATCATCTTGACTGAA 93487 ||||| ||||||||||| | |||||| | | | | || || |||| | ||| | Sbjct 1121 GTACCTAATAACATCGAGATCCTATTTGTTCGTCCGGAGGATTACATCAAGGTTACTCCA 1062 Query 93488 CTTGGACAAGTCCTACGTGATAACCGACACCTGTTCCTATCAAAACAAATCA--TCACGA 93545 || |||||| || || |||||||| ||| | ||| |||||||| | || | | ||| Sbjct 1061 CTCGGACAAATCTTAATCGATAACCGTCACTTATTCTTATCAAAAAACATTAAGTACCGA 1002 Query 93546 AGTTTGGAGGGTACACACGATCCTTAACAAACAAGCTGAAGAATGGTGCAGGTCGTCAAG 93605 || || || || | || |||| || || ||| | Sbjct 1001 --TTCGGTGGATATGC---------AAGGAACAGGCAGA--------------CGT---G 970 Query 93606 AGTTAGTCGAAGAGTTTGGTTATGATACAAAGAACTTTATGCAAGGTGTACGACTACAGT 93665 | ||| ||| | ||| || ||||||||| ||||||||| || | ||| ||| Sbjct 969 ACTTAATCGGTGCTCATGGCTACGATACAAAGTTCTTTATGCACAGTATCCGATTACTAA 910 Query 93666 TGTCTGCAATCGAAATCCTAGAAACAGGTGATTACAGTACATACCGTCCTGAGCGTG-AC 93724 ||||| |||||| | || |||||| |||||||||| || |||||| | || | || Sbjct 909 CAAGTGCAACAGAAATCTTGGAGACAGGTAATTACAGTACGTATCGTCCTAACCGAGAAC 850 Query 93725 TTCTTACTAGGATGTCGAAACGGGGAATACACTCGTGAGCAAGCACTAGCATTAGTAGAA 93784 ||| || ||| ||||| || || |||||||| || |||| ||| | | || ||| Sbjct 849 TTC-TATTAGATTGTCGTAATGGTAAATACACTTTCGAAGAAGCTTTAGAAATGGTTGAA 791 Query 93785 TCATATGATGAGAGGTTACAAGTAGCGCACGAGAATTCGAAGCTGCCTGAGAAACCTGAC 93844 || || | ||| || ||| | ||||| || |||| || | ||| |||| Sbjct 790 ATGTACGACAATGAATTAGCAGCAGCCTATGAGAAATCAGAGCTTCCGGCAAAAGCTGAT 731 Query 93845 TATAACAAAATCAACGGTATGTTAATGGCTATCAATGAA 93883 ||| |||| ||||| |||||||||| ||||||| || Sbjct 730 TATGACAAGATCAATAAGATGTTAATGGATATCAATAAA 692 >seq9627 Length=3127 Score = 214 bits (236), Expect = 2e-50 Identities = 224/296 (76%), Gaps = 14/296 (5%) Strand=Plus/Plus Query 147675 ATGAAAATCGTAAACTTTGGAAGCACATTTAAAATCTACGGAGACGACTTAAAAACATTT 147734 |||||||| | ||||| ||||| || | |||||| ||||| || ||||||||||| | | Sbjct 349 ATGAAAATTATTAACTTCGGAAGTACTTATAAAATTTACGGTGATGACTTAAAAACTTAT 408 Query 147735 GACCAATTACCTGCTGCTACATATAAGGTAGATTTCCACCCAATGCAAGGTTTCTCCTTA 147794 ||| || |||| ||||||||||| || |||| ||||||||| ||| Sbjct 409 GACAAACTACCAGCTGCTACATACAACA-AGATC-------------AGGTTTCTCTTTA 454 Query 147795 GAGAAGATTGACAACTTCGAATCTAAGGAACAAAAGATTTACGGAAGCCACCAAGACAAG 147854 ||||||||||| ||||| ||||| | |||| ||||||||| ||||| |||| ||| || Sbjct 455 GAGAAGATTGATAACTTTGAATCAACGGAAGCAAAGATTTATGGAAGTCACCCAGAAAAA 514 Query 147855 ATTGATAAGGTGTTACGATCCTACGGCAAGTTTGAACGCAGTCTAGGTATCATTCTAAGC 147914 ||| |||| || ||| ||| || | || |||||||| || ||||| | || | || Sbjct 515 ATTAATAAAGTATTAAAATCATATGAAAAATTTGAACGTAGCTTAGGTCTTATCTTGAGT 574 Query 147915 GGCCACAAAGGTATGGGTAAATCAATGTTCGTTCAATTAATTGCAGAAGCAGTAGT 147970 || ||||||| ||||||||||| ||||| |||||| | |||||||||||||| || Sbjct 575 GGTAACAAAGGAATGGGTAAATCTATGTTTGTTCAACTTATTGCAGAAGCAGTTGT 630 Score = 181 bits (200), Expect = 1e-40 Identities = 169/212 (80%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 148046 AGAAGCGTTAGTAGTGTTCGATGAGTTTGAGAAGATGTTCAACCCACGTAACGATAAAGC 148105 |||||| ||| | | || ||||||||||| ||||||||||| || ||||| || |||| Sbjct 671 AGAAGCATTAATTATCTTGGATGAGTTTGAAAAGATGTTCAATCCTCGTAATGAAGAAGC 730 Query 148106 AGAAACACAGGACAACCTGTTAGGTCTATTCGATGGTACGTCTCAGAAGAAGCGTATGTA 148165 ||||| |||||| ||| | | || |||| |||||||| ||||||||||| ||||| || Sbjct 731 AGAAAAACAGGAAAACTTACTGGGGTTATTTGATGGTACTTCTCAGAAGAAACGTATCTA 790 Query 148166 CGCTATCACAGTTAACGA-CTTATACAAAGTGAATGAGTTCATGTTAAGTCGTCCTGGTC 148224 || || || || ||||| |||| | || || |||||||| |||||||| |||||||||| Sbjct 791 TGCGATTACGGTAAACGATCTTA-ATAAGGTAAATGAGTTTATGTTAAGCCGTCCTGGTC 849 Query 148225 GATTCCACTACCACATTCGTTTCGACTACCCA 148256 ||||||| ||||| || || || || || ||| Sbjct 850 GATTCCATTACCATATCCGATTTGATTATCCA 881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488676781533840