Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq737 89.7 1e-12 seq2221 84.2 5e-11 >seq737 Length=174138 Score = 89.7 bits (98), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 110523 TGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582 ||||| ||| | | || || ||||| |||||| || ||||||||| ||||| ||| Sbjct 54079 TGCTTCCTTATCTGCATGAAAGATGACAGTATTGAGGGAATTTATGATACTCTTTTGGAA 54138 Query 110583 ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTAT-TCACGTTCATGATATTCGCTC 110641 |||| ||| |||| |||||||||| ||||| ||| |||| ||||||| | Sbjct 54139 TGTGCTGCTATAAGCAAAACTGCTGGAGGAATCGGTATCTCAA-TTCACAATATTCGAGC 54197 Query 110642 AAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAG 110701 | ||| |||| | | | || || |||| | |||| ||||||| ||| || | Sbjct 54198 TACAGGGAGTTATATTCGAGGAACAAATGGGACTTCCAATGGAATTGTTCCCATGCTACG 54257 Query 110702 AGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGG 110752 || ||||| || ||||| ||||| ||||||||||| |||||||| || Sbjct 54258 CGTTTTCAATGATACTGCCCGTTATGTTGATCAAGGTGGTGGCAAGAGAAAAGG 54311 >seq2221 Length=91375 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/169 (73%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| ||||| |||||| |||||||| ||||| ||||||||||| |||| ||| Sbjct 73615 GATTTCGTTCTTTTCAATCGGCAACCAAGTCTGCACAAAATGTCTATCATGGGGCATCGT 73674 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAA--TGTAAGTG-CTTGTACGCCTT 305438 ||||| ||||| | | || || || ||||| ||| || ||| | || | Sbjct 73675 ATCAAA--ATTATGCCCTACTCAACTTTCCGGTTAAACTTGTCTGTCACTT---CACCGT 73729 Query 305439 ATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | ||||| |||||||| || |||||||||||||||||||| || || || Sbjct 73730 ACAATGCTGATTTTGACGGGGATGAAATGAATATGCATGTTCCCCAGTC 73778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186601694560563