Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq49 98.7 7e-16 seq3204 95.1 8e-15 seq663 93.3 3e-14 seq70 87.8 1e-12 seq3499 86.0 4e-12 seq2503 86.0 4e-12 seq1562 86.0 4e-12 seq654 86.0 4e-12 seq521 86.0 4e-12 seq69 86.0 4e-12 >seq49 Length=387818 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| ||||| |||||||| |||| ||| |||||| |||| || | || || |||||||| Sbjct 238220 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCAAA 238279 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || | || | ||||| ||||| ||||| |||| ||| Sbjct 238280 GATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTCA-CAT 238338 Query 33678 AGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 |||| ||||||| || ||||| || | ||||| || || || || | || || | Sbjct 238339 TGTCAATGGTGTCGGAGGACTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCA 238398 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 238399 CGAAGATCTGCAT 238411 >seq3204 Length=64717 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || |||||| || || || |||||||| || | Sbjct 609 CCACCACGGAGACGAAGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCCGCC 550 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || |||| ||| || |||||||| || | ||||||||| ||| | || Sbjct 549 AGGGTACGTCCATCCTCCAGTTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCTGGGGGA 490 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| | | ||| | ||||| || ||||| Sbjct 489 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCA-CGTTGTCGATTGTGTCAGAAGACTCCAC 431 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || ||||| |||| || || || |||||||||||| Sbjct 430 CTCCAGGGTGATGGTCTTACCAGTTAGGGTCTTGACGAAGATCTGCATA 382 >seq663 Length=181307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || |||||| || || || ||||||||||| | Sbjct 105804 ACCACCACGGAGACGAAGCACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAATCCGC 105863 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || || |||||||| || | ||||||||| || | || Sbjct 105864 CAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGG 105923 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| ||| |||| ||| | |||||| || |||| Sbjct 105924 AATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTGTCAATGGTGTCAGAAGACTCCA 105982 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || ||||| || | || || || |||||||||||| Sbjct 105983 CCTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTGACGAAGATCTGCATA 106032 >seq70 Length=369686 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| || ||||||||||| | || || || | || || | ||| Sbjct 289449 TGGAGTGTGGACTCTTTCTGAATGTTGTAATCAGCCAGAGTTCGGCCATCCTCAAGTTGC 289390 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| || | ||||||||| || | || | || || ||||| ||| ||| Sbjct 289389 TTGCCGGCAAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCTTGAATCTTC 289330 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || ||||| ||| | ||||| || || || |||| |||||||| || || || Sbjct 289329 ACCTT-AACATTGTCGATAGTGTCTGAGGACTCGACCTCAAGAGTGATCGTCTTGCCGGT 289271 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 | || || ||||| ||||||||| Sbjct 289270 GAGGGTCTTGACAAAAATCTGCATA 289246 >seq3499 Length=58236 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || ||| | || | || || || ||| || || ||| Sbjct 8969 AAAATCTGCATGCCACCGCGCAGACGCAGGACAAGGTGCAGGGTCGACTCCTTCTGGATG 9028 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || || ||| | || || | || || || ||||| |||| |||||| Sbjct 9029 TTGTAATCAGCAAGAGTTCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGC 9088 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||| |||||||| ||| || || | |||| ||| | ||||| Sbjct 9089 TGGTCCGGAGGAATACCCTCTTTGTCCTGAATCTT-TGCCTTGACATTGTCAATCGTGTC 9147 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| |||| ||||| || || || || | || || ||||| |||||||| Sbjct 9148 TGATGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 9207 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || ||| | || | || || || ||| || || ||| Sbjct 10473 AAAATCTGCATGCCACCGCGCAGACGCAGGACAAGGTGCAGGGTCGACTCCTTCTGGATG 10532 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || || ||| | || || | ||||| || ||||| || | |||||| Sbjct 10533 TTGTAATCAGCAAGGGTCCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGGCGCTGC 10592 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||| |||||||| ||| || || | |||| ||| | ||||| Sbjct 10593 TGGTCCGGAGGAATACCCTCTTTGTCCTGAATCTT-TGCCTTGACATTGTCAATCGTGTC 10651 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| |||| ||||| || || || || | || || ||||| |||||||| Sbjct 10652 TGATGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 10711 >seq2503 Length=81757 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||| | || || ||| ||| || || |||||||| || | Sbjct 18182 CCACCACGGAGACGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 18123 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || |||||||| || | ||||||||| || | || Sbjct 18122 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGA 18063 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| |||| ||| |||| |||||| || ||||| Sbjct 18062 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTGTCAATGGTGTCAGAAGACTCCAC 18004 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || ||||| || | || || ||||||||||||||| Sbjct 18003 CTCCAGGGTGATGGTCTTACCAGTCAGGGTCTTGACAAAGATCTGCATA 17955 >seq1562 Length=116030 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || |||||| || || || |||||||| || | Sbjct 82532 CCACCACGGAGACGAAGCACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCCGCC 82591 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || |||||||| || | ||||||||| || | || Sbjct 82592 AGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGACGCTGCTGGTCCGGGGGA 82651 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || ||| |||| ||| |||| |||||| || ||||| Sbjct 82652 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTGTCAATGGTGTCAGAAGACTCCAC 82710 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||| || || |||||||||||| Sbjct 82711 CTCCAGGGTGATGGTCTTCCCAGTGAGCGTCTTGACGAAGATCTGCATA 82759 >seq654 Length=182673 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | || ||| | || | || || || ||| || || ||| Sbjct 10605 AAAATCTGCATGCCACCGCGCAGACGCAGGACAAGGTGCAGGGTCGACTCCTTCTGGATG 10664 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || || ||| | || || | || || || ||||| |||| |||||| Sbjct 10665 TTGTAATCAGCAAGAGTTCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGC 10724 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||| |||||||| ||| || || | |||| ||| | ||||| Sbjct 10725 TGGTCCGGAGGAATACCCTCTTTGTCCTGAATCTT-TGCCTTGACATTGTCAATCGTGTC 10783 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| |||| ||||| || || || || | || || ||||| |||||||| Sbjct 10784 TGATGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 10843 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || | ||| || ||| ||| || || ||||||||||| | Sbjct 10160 ACCACCACGCAGACGCAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 10219 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| |||| || || || || || || | |||||||| ||| | || Sbjct 10220 AAGAGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCTGGGGG 10279 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || || | |||| ||| | || || || |||| Sbjct 10280 AATGCCCTCCTTGTCTTGGATCTT-TGCCTTGACATTGTCGATTGTATCAGAGGACTCCA 10338 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || ||||| ||||||||| Sbjct 10339 CCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCATA 10388 >seq521 Length=200567 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 186948 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 187007 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 187008 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 187067 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | ||| | |||||| || ||||| || | |||||| || | Sbjct 187068 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCTGAGGACTCCACCTCCAGCGTGATGGTCT 187126 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 187127 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 187157 >seq69 Length=371005 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 328613 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 328554 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 328553 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 328494 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | ||| | |||||| || ||||| || | |||||| || | Sbjct 328493 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCTGAGGACTCCACCTCCAGCGTGATGGTCT 328435 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 328434 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 328404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328648383591360