Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_025424.1 Length=45648 Score E Sequences producing significant alignments: (Bits) Value seq9885 170 6e-38 >seq9885 Length=2412 Score = 170 bits (188), Expect = 6e-38 Identities = 204/279 (73%), Gaps = 11/279 (4%) Strand=Plus/Minus Query 25723 CACCACTTAGAGAGTAACAGATTTCAACTCCAATAGATTTACGATTTCCGTTACCGCCAC 25782 ||||| || ||||||||||||||||| || |||||||| || ||||||||||| |||| Sbjct 2060 CACCAGATAATGAGTAACAGATTTCAACACCGATAGATTTTCGGTTTCCGTTACCACCAC 2001 Query 25783 CATCACCGCAATGCCAAGCGTTACGCTCTAAAGGAATACCTTGTACAGCTTCTTTATCGT 25842 ||||||| ||||||||||| ||||| || | ||||||||||| | | |||| |||| | Sbjct 2000 CATCACCACAATGCCAAGCATTACGATCAACCGGAATACCTTGAATAACTTCGATATCAT 1941 Query 25843 CTACCGCAATATGAAACGATACTTGGTTATCATTACGAATCATATAAGCCACTTCGTTAT 25902 |||| || | || || || ||| | ||||| ||| || ||||| | Sbjct 1940 CTACTGCGAAGTGGAATGA-----------AATTTCCGATCATGTAATTTACCTCGTTCT 1892 Query 25903 TTGCTGTAGCATCGTTATAAGTATTGTGGACAGTAATGAATTCTGGATTCATTGTATAAG 25962 | || | ||||| |||||||| || || || |||||| | |||| ||||| | ||||| Sbjct 1891 TAGCAGGCGCATCATTATAAGTGTTATGCACTGTAATGTACTCTGCTTTCATAGAATAAG 1832 Query 25963 GGCACTTAGTACCATATTTGCTTGCATCAACTAAATTTT 26001 | ||||| | |||||||||| | | || | ||||| Sbjct 1831 GACACTTGATTGGGTATTTGCTTGTAGCCACAAGATTTT 1793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145927938262060