Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq70 96.9 3e-15 seq3634 84.2 2e-11 seq1443 84.2 2e-11 seq49 82.4 7e-11 >seq70 Length=369686 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| |||| || | | | ||||| || |||||||| ||||| || || Sbjct 290152 ACGGAGGCGCAGCACCAGGTGAAGGGTAGACTCCTTCTGAATGTTATAGTCCGCCAGCGT 290093 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| ||||||| | |||| || |||||||| || || || ||||| Sbjct 290092 ACGACCATCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGTTGGTCCGGCGGGATGCC 290033 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||| | | ||| || || | Sbjct 290032 CTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTATCAGATGACTCAACCTCCAG 289973 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || ||||||||||| | ||||||||||||| Sbjct 289972 GGTGATTGTCTTGCCGGTCAGAGTTTTCACGAAAATCTGCATG 289930 >seq3634 Length=55208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||||||||| |||||||| ||| || ||| ||| ||||||| | Sbjct 736 AAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCT 681 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || || |||||| || |||||| || | Sbjct 680 AGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTG 621 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| | ||||||||||| || ||| |||||| | ||||| ||||| Sbjct 620 GCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGA 561 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||| || || ||| ||||| || || ||| Sbjct 560 CGAGGGCCTCCACTGCGACTTCGCCTGCCTC 530 >seq1443 Length=121453 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||||||||| |||||||| ||| || ||| ||| ||||||| | Sbjct 25868 AAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCT 25813 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || || |||||| || |||||| || | Sbjct 25812 AGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTG 25753 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| | ||||||||||| || ||| |||||| | ||||| ||||| Sbjct 25752 GCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGA 25693 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||| || || ||| ||||| || || ||| Sbjct 25692 CGAGGGCCTCCACTGCGACTTCGCCTGCCTC 25662 >seq49 Length=387818 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| | ||| || || || ||||| || |||| | Sbjct 238218 GACTCCTTTTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCA 238277 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || |||||||| || || ||||| |||| Sbjct 238278 AAGATGAGGCGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTGGCCTTCACA 238337 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | |||||| || | || | || || ||||| || || || Sbjct 238338 TTGTCAATGGTGTCGGAGGACTCCACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTC 238397 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 238398 ACGAAGATCTGCATG 238412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476528490083880