Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq5885 96.9 3e-15 seq445 96.9 3e-15 seq99 87.8 2e-12 seq2067 82.4 7e-11 >seq5885 Length=24594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||| | |||||| ||||||||||| ||| |||| ||||| || | |||| Sbjct 15890 CTCGATGATCATCTGCGCGACGCGGTCGCCGGGCCTCACCGCGAAGTCGTCGT--CCGAG 15833 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||||||||||||||| | | || ||| |||||| |||||| ||||| || ||| Sbjct 15832 TGGTTGAAGAGCACCACTCCGACGGGGCCGCGGTAGTCCGCGTCCACCACGCCGGCGCCC 15773 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGC 5498 || || | | || || | ||| || || |||| |||||| Sbjct 15772 ACGTCGATGCCGTGCTTCAGCGCCAGCCCAGACCGCGGCGC 15732 >seq445 Length=212115 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 5340 CTCGCAGATGAGCTGCGCCACGCGGTCGCCTCGCCGCACCACGAAGGTCTCTTGGCCGAA 5399 |||| ||| | |||||| ||||||||||| ||| |||| ||||| || | |||| Sbjct 32582 CTCGATGATCATCTGCGCGACGCGGTCGCCGGGCCTCACCGCGAAGTCGTCGT--CCGAG 32525 Query 5400 --GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGACGCCCGCTCCC 5457 |||||||||||||||||| | | || ||| |||||| |||||| ||||| || ||| Sbjct 32524 TGGTTGAAGAGCACCACTCCGACGGGGCCGCGGTAGTCCGCGTCCACCACGCCGGCGCCC 32465 Query 5458 ACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGC 5498 || || | | || || | ||| || || |||| |||||| Sbjct 32464 ACGTCGATGCCGTGCTTCAGCGCCAGCCCCGACCGCGGCGC 32424 >seq99 Length=342384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 5257 ACGCCCGTGGACCCGAATCCCGAGGAGCCGCGCGTCGTGGAGGGCATGCCCTCCACCTCC 5316 ||||| ||||| ||||| || ||||||| |||| | || | ||||||||||| Sbjct 100690 ACGCCGGTGGATCCGAACCCTCCCTCGCCGCGCACGGTGGCGTCCAGGTCCTCCACCTCC 100631 Query 5317 ATGATGCACGGTCGGCAGAAGCACTCGCA-GATGAGCTGCGCCACGCGGTCGCCTCGCCG 5375 || ||| || | || ||| | | ||| | |||||| | ||||||||| || Sbjct 100630 GCGACCTCCGG-CGTCGCAATCACCTGGATGATCATCTGCGCGATGCGGTCGCCGGGCTT 100572 Query 5376 CACCACGAAGGTCTCTTGGCCGAA--GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAG 5433 || ||||| | | | ||||| ||||||||| | || |||| | ||| ||| || Sbjct 100571 GACGGCGAAGTCCACGT--CCGAATGGTTGAAGAGGATGACCCCCACGGGCCCGCGGTAG 100514 Query 5434 TCCGGGTCCACGACGCCCGCTCCCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTC 5493 |||| ||| | ||||| || ||||| || | | ||| || | ||| || ||||||||| Sbjct 100513 TCCGCGTCGATCACGCCGGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGCCCGGACCTC 100454 Query 5494 GGCGC 5498 ||||| Sbjct 100453 GGCGC 100449 >seq2067 Length=96128 Score = 82.4 bits (90), Expect = 7e-11 Identities = 168/245 (69%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 5257 ACGCCCGTGGACCCGAATCCCGAGGAGCCGCGCGTCGTGGAGGGCATGCCCTCCACCTCC 5316 ||||| ||||| ||||| || ||||||| |||| | || | ||||||||||| Sbjct 57565 ACGCCGGTGGATCCGAACCCACCCTCGCCGCGCACGGTGGCGTCCAGGTCCTCCACCTCC 57624 Query 5317 ATGATGCACGGTCGGCAGAAGCACTCGCA-GATGAGCTGCGCCACGCGGTCGCCTCGCCG 5375 || ||| || | | ||| | | ||| | |||||| | ||||||||| || Sbjct 57625 GCGACCTCCGG-CGTCGCGATCACCTGGATGATCATCTGCGCGATGCGGTCGCCGGGCTT 57683 Query 5376 CACCACGAAGGTCTCTTGGCCGAA--GTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAG 5433 || ||||| | | | |||| ||||||||| | || |||||| || ||| || Sbjct 57684 GACGGCGAAGTCCACGT--CCGAGTGGTTGAAGAGGATGACCCCCAGGGGGCCGCGGTAG 57741 Query 5434 TCCGGGTCCACGACGCCCGCTCCCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTC 5493 |||| ||| | |||||||| ||||| || | | ||| || | ||| || ||||||||| Sbjct 57742 TCCGCGTCGATCACGCCCGCGCCCACGTCGATGGAGTGCTTCAGCGCCAGCCCGGACCTC 57801 Query 5494 GGCGC 5498 ||||| Sbjct 57802 GGCGC 57806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447733487963880