Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq5025 156 5e-33 seq1910 114 1e-20 >seq5025 Length=34140 Score = 156 bits (172), Expect = 5e-33 Identities = 242/342 (71%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | ||||||||| | | |||| |||||||||||||| || ||||| | Sbjct 14228 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGC 14169 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 14168 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 14109 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| |||||||||||||| | |||||||||||| | | ||| ||||| ||||| Sbjct 14108 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 14051 Query 161867 T-ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 161925 | || || | ||| ||| || || | | | | || ||| | | || || |||| Sbjct 14050 TAACGGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 13991 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 | || || || ||||||||||| || ||| ||| | || || || |||| ||||| Sbjct 13990 GACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 13931 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCC 162027 | || || ||||| || || || ||||| || |||||| ||| Sbjct 13930 TTGCTCTACATGGGGCTTTTGCACTAATAGGTTTCATGTTCC 13889 >seq1910 Length=102200 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | ||||||||| | | |||| |||||||||||||| || ||||| || Sbjct 8341 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 8400 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 8401 CTATTACTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 8460 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| |||||||||||||| | |||||||||||| | | ||| ||||| ||||| Sbjct 8461 GTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCT 8518 Query 161867 TA 161868 || Sbjct 8519 TA 8520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559406905074600