Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq5025 145 9e-30 seq1910 109 7e-19 >seq5025 Length=34140 Score = 145 bits (160), Expect = 9e-30 Identities = 230/327 (70%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 ||||||||||| | | |||| || || || ||||| || ||||| | || | || Sbjct 14218 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCT 14159 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||||||| | || | || |||||| |||| ||||| ||||||| || || Sbjct 14158 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 14099 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 182549 |||| ||||| || | ||| ||||||| | |||||| || |||||| |||||||| Sbjct 14098 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCG 14040 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 14039 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCA 13980 Query 182610 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 182669 || ||| |||| || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 13979 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACAT 13920 Query 182670 GGTGCCTTCGCTCTCATTGGTTTCATG 182696 || || || || || || ||||||||| Sbjct 13919 GGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 109 bits (120), Expect = 7e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 ||||||||||| | | |||| || || || ||||| || ||||| || || |||| Sbjct 8351 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCT 8410 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||||||| | || | || |||||| |||| ||||| ||||||| || || Sbjct 8411 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 8470 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 182549 |||| ||||| || | ||| ||||||| | |||||| || |||||| |||||||| Sbjct 8471 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCG 8529 Query 182550 GTCTCGACGCCTGC 182563 || || || ||||| Sbjct 8530 GTTTCCACCCCTGC 8543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614510940798240