Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq6788 127 3e-24 seq5025 111 2e-19 seq4399 98.7 1e-15 >seq6788 Length=15930 Score = 127 bits (140), Expect = 3e-24 Identities = 133/172 (77%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | |||||||||||| |||| ||||| |||||| | ||||| ||||| || || || Sbjct 6645 ACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 6586 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | || || |||||||| ||| | | |||||| ||||| || || || || || Sbjct 6585 GCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTAT 6527 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 174659 ||||| || || ||||||| | | ||||||||||| || ||||||||| Sbjct 6526 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGT 6475 >seq5025 Length=34140 Score = 111 bits (122), Expect = 2e-19 Identities = 225/334 (67%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || ||||| | | Sbjct 14226 TGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCT 14167 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | || | || || ||| |||| || || |||||||| Sbjct 14166 ATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGT 14107 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || |||||| |||||||| | ||| ||||||| | || ||| || || | || Sbjct 14106 AACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAAC 14047 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || || || || || ||||| || | | | || ||| | | ||||| ||||| || Sbjct 14046 GGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACC 13987 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 ||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 13986 GGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGC 13927 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATG 176186 ||| || || || || || || || || |||||| Sbjct 13926 TCTACATGGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq4399 Length=42927 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 176539 ATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATA 176598 |||| ||||||||||| |||||||| ||||| |||||||| || ||||| ||| |||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 176599 AGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCA 176637 | |||||| | || ||||||||| | ||||| || |||| Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 11223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729802929842040