Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq5025 150 2e-31 seq1910 113 5e-20 >seq5025 Length=34140 Score = 150 bits (166), Expect = 2e-31 Identities = 231/327 (71%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||||| | | |||| || || || ||||| || ||||| | || | || Sbjct 14218 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCT 14159 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| ||||| ||||||| || || Sbjct 14158 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 14099 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTT-ACGGCAGCT 179411 |||| ||||| || | |||||||||||| | || ||| || |||||| |||||||| Sbjct 14098 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCG 14040 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 14039 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCA 13980 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || ||| |||| || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 13979 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACAT 13920 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATG 179558 || || || || || || ||||||||| Sbjct 13919 GGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 113 bits (124), Expect = 5e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||||| | | |||| || || || ||||| || ||||| || || |||| Sbjct 8351 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCT 8410 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| ||||| ||||||| || || Sbjct 8411 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 8470 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTT-ACGGCAGCT 179411 |||| ||||| || | |||||||||||| | || ||| || |||||| |||||||| Sbjct 8471 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCG 8529 Query 179412 GTCTCGACGCCTGC 179425 || || || ||||| Sbjct 8530 GTTTCCACCCCTGC 8543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605904434609040