Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq5025 136 5e-27 seq1910 109 7e-19 seq6788 107 2e-18 seq300 93.3 5e-14 seq2985 91.5 2e-13 >seq5025 Length=34140 Score = 136 bits (150), Expect = 5e-27 Identities = 228/327 (70%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| | | | ||||| || || ||||| || ||||| | ||| | || Sbjct 14218 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCT 14159 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || || ||||||| || || Sbjct 14158 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 14099 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 180209 |||| ||||| || | ||| ||||||| | |||||| || |||||| |||||||| Sbjct 14098 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCG 14040 Query 180210 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 180269 || || || ||||| | | | | || ||| | | ||||| ||||| || || | Sbjct 14039 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCA 13980 Query 180270 CAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 180329 || ||| |||| || ||||| ||| | || || || |||| ||| || ||||| || Sbjct 13979 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACAT 13920 Query 180330 GGTGCCTTCGCCCTAATTGGATTTATG 180356 || || || || ||||| || || ||| Sbjct 13919 GGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 109 bits (120), Expect = 7e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| | | | ||||| || || ||||| || ||||| || ||| |||| Sbjct 8351 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCT 8410 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || || ||||||| || || Sbjct 8411 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 8470 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 180209 |||| ||||| || | ||| ||||||| | |||||| || |||||| |||||||| Sbjct 8471 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCAGCG 8529 Query 180210 GTCTCGACGCCTGC 180223 || || || ||||| Sbjct 8530 GTTTCCACCCCTGC 8543 >seq6788 Length=15930 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| |||| | |||||| | || | || ||||| ||||| || Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| || || || || | || ||| | || || || Sbjct 6606 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTCC 6548 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | ||||||||||| Sbjct 6547 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 6488 Query 179040 CATCATCTCTGGT 179052 || ||||||||| Sbjct 6487 TATTATCTCTGGT 6475 >seq300 Length=244684 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449 ||||||||||| || ||||| || || ||||| || | ||||||||||||||||| Sbjct 146224 TACATCCTCGATGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGG 146165 Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509 ||||| || |||| ||||||||| ||||| ||| |||||||| ||| ||| Sbjct 146164 GCTTGCTCTACCTGCGCTGGTAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCC 146105 Query 177510 TTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGTGTCATATCCCACC 177569 ||| | ||||| | || || ||| | | | ||||| || ||||| || |||| Sbjct 146104 TTCCTCGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGCGTGTCGTACCCCAAG 146045 Query 177570 AGCGATTGTGT 177580 |||||||| Sbjct 146044 TCTGATTGTGT 146034 >seq2985 Length=69808 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 177390 TACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGT 177449 |||||||||||||| ||||| || || ||||| || | ||||||||||||||||| Sbjct 54249 TACATCCTCGACGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGG 54308 Query 177450 GCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAATCG 177509 ||||| || |||| ||||| ||| ||||| ||| |||||||| ||| ||| Sbjct 54309 GCTTGCTCCACCTGCGCTGGCAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCC 54368 Query 177510 TTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGTGTCATATCCCA 177567 ||| | ||||| | || || ||| | | | ||||| || ||||| || |||| Sbjct 54369 TTCCTTGATGATGGGCAGCAGGCTGAAGGCTATGTGCTGACATGCGTGTCGTACCCCA 54426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610223684927040