Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq737 109 8e-19 seq837 91.5 2e-13 seq3634 89.7 7e-13 seq3014 89.7 7e-13 seq1443 89.7 7e-13 >seq737 Length=174138 Score = 109 bits (120), Expect = 8e-19 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | |||||| | ||| | || | ||||| |||| ||| ||| Sbjct 54296 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACGCGTAGCATGGGAACAATTCCA 54237 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||||||||| ||| | || |||||||| ||| || Sbjct 54236 TTGGAAGTCCCATTTGTTCCTCGAATATAACTCCCTGTAGCTCGAATATTGTGAATTGAG 54177 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAA---TGTGTCATAT 69927 | ||| |||||||| || |||| | ||| |||| || || ||| || ||||| Sbjct 54176 ATACCGATTCCTCCAGCAGTTTT---GCTTATAGCAGCACATTCCAAAAGAGTATCATAA 54120 Query 69928 ATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || ||||| || || |||||| ||||| | ||| || |||||| Sbjct 54119 ATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAGCAGCTA 54075 >seq837 Length=163444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | |||||| | ||| | || | ||||| |||| ||| ||| Sbjct 144442 CCACCTTGATCAACATAACGGGCAGTATCATTGAAAACGCGTAGCATGGGAACAATTCCA 144501 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||| ||||| || | || |||| ||| ||| || Sbjct 144502 TTGGAAGTCCCATTTGTTCCTCGAATGTAACTCCCGGTAGCTCGAACATTGTGAATTGAG 144561 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTT---TCAATGTGTCATAT 69927 | ||| |||||||| || |||| | ||| |||| || || | || |||||| Sbjct 144562 ATACCGATTCCTCCAGCAGTTTT---GCTTATAGCAGCACATTCGGAAAGAGTATCATAT 144618 Query 69928 ATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || ||||| || || |||||| ||||| | ||| || |||||| Sbjct 144619 ATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAGCAGCTA 144663 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/119 (78%), Gaps = 6/119 (5%) Strand=Plus/Plus Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 |||||||| | ||||||||| || ||||| || || || || || || || ||| ||||| Sbjct 143095 AGAATAAAAGTATCTGCCAAACCTTGAACGCCTATCCCAATTGGCCTGTGCCTCATATTT 143154 Query 69142 GAA--CTTT-CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 || |||| ||| ||| |||||| |||||||||||||| || ||||| || ||||| Sbjct 143155 GACTTCTTTGCAGTTTC---AATAGGGTAATAATTAATATCAATGATTTTGTTCAGATT 143210 >seq3634 Length=55208 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 533 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 592 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 593 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 651 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 652 AGATGCCCTCGAC 664 >seq3014 Length=68818 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| |||| | || ||| |||| || || Sbjct 3590 TCCGCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGCAACATAGGAACTATCCC 3649 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | ||||||||||| |||||||| || | || |||||||| || || Sbjct 3650 ATTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCTCGAATATTGTGAACTGA 3709 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||| || || ||| || | ||||| |||| || ||||| || Sbjct 3710 GACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCCTTCAGAGTATCATAGAT 3769 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| || || |||||||| Sbjct 3770 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 3811 >seq1443 Length=121453 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 25665 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 25724 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 25725 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 25783 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 25784 AGATGCCCTCGAC 25796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686789595564120