Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_027352.1 Length=159492 Score E Sequences producing significant alignments: (Bits) Value seq9627 246 3e-60 >seq9627 Length=3127 Score = 246 bits (272), Expect = 3e-60 Identities = 232/297 (78%), Gaps = 14/297 (5%) Strand=Plus/Minus Query 40697 AACAACTGCTTCTGCAATCAACTGTACGAACATTGATTTACCCATACCTTTGTTACCACT 40756 |||||||||||||||||| | || || ||||| ||||||||||| |||||||||||||| Sbjct 631 AACAACTGCTTCTGCAATAAGTTGAACAAACATAGATTTACCCATTCCTTTGTTACCACT 572 Query 40757 TAGGATAAGACCTAGACTGCGCTCAAACTTATCGTAGGATCGTAACACTTTCTCAATCTT 40816 | ||||||||||| || || ||||| || || || ||| ||| ||||| | ||| || Sbjct 571 CAAGATAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTT 512 Query 40817 CTCTGCGTGGCTACCATAAATCTTTTGTTCTTTAGATTCAAAGTTATCAATTTTTTCTAA 40876 |||| ||| || |||||||||||| ||| | ||||||||||||||||| || ||||| Sbjct 511 TTCTGGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAA 452 Query 40877 AGAGAATCCTTGCATCGGGTGGAAATCTACCTTGTATGTAGCAGCAGGTAATTGGTCATA 40936 |||||| ||| |||| |||||||||||||| |||| || |||||| Sbjct 451 AGAGAAACCT-------------GATCT-TGTTGTATGTAGCAGCTGGTAGTTTGTCATA 406 Query 40937 AGTTTTTAAGTCGTCTCCGTAGATTTTAAATGTGCTTCCAAAGTTTACGATTTTCAT 40993 |||||||||||| || ||||| |||||| | || ||||| ||||| | |||||||| Sbjct 405 AGTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT 349 Score = 174 bits (192), Expect = 2e-38 Identities = 165/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 40412 TGGGTAGTCGAAACGAATGTGGTAATGGAATCGACCAGGACGACTTAACATGAACTCGTT 40471 ||| || || || || || ||||||||||||||||||||||| |||||||| ||||| || Sbjct 881 TGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAACTCATT 822 Query 40472 CACTTTGTATAGGTCGTTAACTGTGATAGCATACATACGTTTCTTCTGAGATGTACCATC 40531 || || | || ||||| || || || ||||| ||||||||||||||||| |||||||| Sbjct 821 TACCTTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTCTTCTGAGAAGTACCATC 762 Query 40532 GAATAGTCCTAACAAGTTATCTTGCGACTCTGCTTTATCATTACGTGGGTTGAACATTTT 40591 |||| || | ||||| || || ||||||| |||||||| || |||||||| || Sbjct 761 AAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTGAACATCTT 702 Query 40592 CTCAAACTCATCGAACACCACTAACACTTCT 40622 ||||||||||| || | | ||| ||||| Sbjct 701 TTCAAACTCATCCAAGATAATTAATGCTTCT 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510157853115360