Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_027355.1 Length=159071 Score E Sequences producing significant alignments: (Bits) Value seq9627 255 6e-63 seq10635 140 3e-28 seq13288 100 3e-16 >seq9627 Length=3127 Score = 255 bits (282), Expect = 6e-63 Identities = 234/297 (79%), Gaps = 14/297 (5%) Strand=Plus/Minus Query 78642 AACAACTGCTTCTGCAATCAACTGCACGAACATTGATTTACCCATACCTTTGTTACCACT 78701 |||||||||||||||||| | || || ||||| ||||||||||| |||||||||||||| Sbjct 631 AACAACTGCTTCTGCAATAAGTTGAACAAACATAGATTTACCCATTCCTTTGTTACCACT 572 Query 78702 TAGGATAAGTCCTAGGCTACGCTCAAACTTATCGTAGGATCGTAACACTTTCTCAATCTT 78761 | |||||| |||| |||||| ||||| || || || ||| ||| ||||| | ||| || Sbjct 571 CAAGATAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTT 512 Query 78762 CTCTGCATGGCTACCATAAATCTTTTGTTCCTTAGATTCAAAGTTATCAATTTTTTCTAA 78821 |||| || || |||||||||||| |||| | ||||||||||||||||| || ||||| Sbjct 511 TTCTGGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAA 452 Query 78822 AGAGAATCCTTGCATTGGGTGGAAATCTACCTTGTATGTAGCAGCAGGTAATTGGTCATA 78881 |||||| ||| |||| |||||||||||||| |||| || |||||| Sbjct 451 AGAGAAACCT-------------GATCT-TGTTGTATGTAGCAGCTGGTAGTTTGTCATA 406 Query 78882 AGTTTTTAAGTCGTCTCCGTAGATTTTAAATGTGCTTCCAAAGTTTACAATTTTCAT 78938 |||||||||||| || ||||| |||||| | || ||||| ||||| | ||||||||| Sbjct 405 AGTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT 349 Score = 178 bits (196), Expect = 1e-39 Identities = 166/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 78357 TGGGTAGTCGAAACGAATGTGGTAATGGAATCGACCAGGACGACTTAACATGAACTCATT 78416 ||| || || || || || ||||||||||||||||||||||| |||||||| |||||||| Sbjct 881 TGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAACTCATT 822 Query 78417 CACTTTATACAAGTCGTTCACTGTGATAGCATACATACGTTTCTTCTGAGATGTGCCATC 78476 || |||| | ||||| || || || ||||| ||||||||||||||||| || ||||| Sbjct 821 TACCTTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTCTTCTGAGAAGTACCATC 762 Query 78477 GAACAATCCTAACAAGTTATCTTGTGATTCAGCTTTATCGTTACGTGGGTTGAACATCTT 78536 || || || | ||||| || ||| ||| |||| || ||||| || ||||||||||| Sbjct 761 AAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTGAACATCTT 702 Query 78537 CTCAAACTCATCGAATACTACTAGTACTTCT 78567 ||||||||||| || | | || | ||||| Sbjct 701 TTCAAACTCATCCAAGATAATTAATGCTTCT 671 >seq10635 Length=1693 Score = 140 bits (154), Expect = 3e-28 Identities = 455/699 (65%), Gaps = 32/699 (5%) Strand=Plus/Plus Query 128535 TTCATTGATACCCATTAACATCTCGTTGATCTTGTTGTAATCAGGTTTCTCAGGCAGCTT 128594 || ||||||| |||||||||||| |||||||||| ||||||| ||| | || |||| Sbjct 692 TTTATTGATATCCATTAACATCTTATTGATCTTGTCATAATCAGCTTTTGCCGGAAGCTC 751 Query 128595 CGAGTTAGCGTGTGCAACTTCCAACTTCCCT-TCGTAATATGCGATGATATCTAGTGCTT 128653 || || | | || || | || ||| | ||||| | | | || |||| |||| Sbjct 752 TGATTTCTCATAGGCTGCTGCTAA-TTCATTGTCGTACATTTCAACCATTTCTAAAGCTT 810 Query 128654 GCTCTTTAGTATACTCACCGTTTCGGAACCCTAGAAGTGTTTCACGCTCAGGACGGTAGG 128713 || ||| || | ||| || || | ||| || ||| || | |||||| || | Sbjct 811 CTTCGAAAGTGTATTTACCATTACGACAATCTAATAGAAGTTCTCGGTTAGGACGATACG 870 Query 128714 TACTGTAGTCACTTGTGTCTAGGATTTCGATTGCAGAGATTAATAGTCTAGCACCCTGCA 128773 ||||||| | || ||| || | |||||| ||||| ||| || || || |||| Sbjct 871 TACTGTAATTACCTGTCTCCAAGATTTCTGTTGCACTTGTTAGTAATCGGATACTGTGCA 930 Query 128774 TGAAGTTCTTTGTATCGTAACCGAACTTCTCC-ACCAACTCCTGACGACCTGCTCCGTTC 128832 | ||| |||||||||||| || | | || | || || | | |||| ||| | | Sbjct 931 TAAAGAACTTTGTATCGTAGCC-ATGAGCACCGATTAAGTCACGTCTGCCTGTTCCTTGC 989 Query 128833 TTAATTTTGTTCGTCAGGGATCGTGTGTAACCCCCAAACTTCGTGATGATTTGTTTCGAT 128892 || || | | |||| ||| | | ||| ||| | ||| Sbjct 990 ATA-------TCCACCGA-ATCG---GTA------------CTTAATGTTTTTT---GAT 1023 Query 128893 AGGAATAGGTGTCGGTTATCGACTAAGACTTGTCCTAATTCAGTCAAGATGATGAAATCT 128952 | ||||| ||| |||||||||| ||||| |||||| | | ||| | ||||| |||| Sbjct 1024 AAGAATAAGTGACGGTTATCGATTAAGATTTGTCCGAGTGGAGTAACCTTGATGTAATCC 1083 Query 128953 TCTTTTCTAGCAAACAGTACTTCAATGTTGTTCGGAACACCAAGCATAGCATCCTTTACG 129012 || | | |||| || | || ||||| || || || | |||||||||| | || Sbjct 1084 TCCGGACGAACAAATAGGATCTCGATGTTATTAGGTACGCTTTGCATAGCATCTCTAACA 1143 Query 129013 AACTTACTGATATGTAGGATGTTGATGTCTACATCGTCCTTTGTATTCTTAAATGTCTTC 129072 ||||| | | ||| | |||||| | || ||||| ||||| || || | || | || Sbjct 1144 AACTTGTTCACATGAATGATGTTTACATCGACATCATCCTTCGTGTTTCTGAAGTTTTTA 1203 Query 129073 CCACCTGTGTTATTGTACTCATTGAACGTTTCTAATCCGTAGAAGTATTCTTTCGGTGGG 129132 ||||||| | ||||||||||| || | || || || || | || || |||||| Sbjct 1204 CCACCTGATGTGTTGTACTCATTAAATGAATCCAAACCTAAGTAATACTCAACTGGTGGG 1263 Query 129133 ATACAAACTCCTTTGAAATCCCAATCTGAGTTCTCTGTGTCAGTTCCGTATAAACGGCTA 129192 || || || || || | ||| |||||| | ||||| || ||||| || | ||| Sbjct 1264 ATGCATACACCCTTATAGTCCTTATCTGATGTATCTGTATCTGTTCCATAGGCATAACTA 1323 Query 129193 CC-GTATGGTACTAAGATGATTGTTCTCTCTTCCATCCA 129230 || ||| | || |||| ||||||||| ||||| | ||| Sbjct 1324 CCTGTAGGAGAC-AAGAGGATTGTTCTATCTTCTAACCA 1361 >seq13288 Length=1052 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 34777 ATGGAGGAGGGCAGGAGACTCGAACTCCTATCGGTTTTACCCTACGTCTGCTTTCAAGGC 34836 |||| |||||| | ||||||||| || ||||||||||||||||||| | ||||||| | Sbjct 853 ATGGCGGAGGGTGAGGGACTCGAACCCCCATCGGTTTTACCCTACGTCAGTTTTCAAGAC 912 Query 34837 AGGTCTCTTACCAGTTAGAGTAGCCCTCCA 34866 | |||||||||| |||||||| ||||||| Sbjct 913 TGATCTCTTACCAATTAGAGTAACCCTCCA 942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508810886905080