Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4632 132 6e-26 seq5229 120 4e-22 seq1443 118 1e-21 seq3634 114 2e-20 seq2924 114 2e-20 seq3299 105 8e-18 seq1932 96.9 4e-15 seq6216 87.8 2e-12 >seq4632 Length=39362 Score = 132 bits (146), Expect = 6e-26 Identities = 221/320 (69%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || || || || ||||| || || || |||||||| ||| | Sbjct 26452 AATCCATCCATCTCTGTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 26507 Query 11600 ATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||||||| |||| || ||| | || || |||||||||||||||||||||||| Sbjct 26508 --ACCACCAAGCCCGGCACCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACA 26565 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || || || || | ||| | |||||||| || || || || |||||| ||| Sbjct 26566 ATGCAGGGCGCCTTGGCCTTGGCCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACA 26625 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || ||||| | ||| || || | || |||| ||| || ||| || || | || Sbjct 26626 CCGACAAAGAGCTCGACGAACTCTGACGCAGCGCAGGAGAAGAACGGCACCCCGGCCTCT 26685 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || |||| ||| || |||||||| || || || || || ||| || |||| ||| | Sbjct 26686 CCGGCGACGGCACGCGCGAGGAGAGTTTTACCTGTCCCAGGCGGGCCGACGAGGAGGCAG 26745 Query 11834 CCTCGGGGGATCTTGGCACC 11853 || ||||||||||| || Sbjct 26746 CCCTTTGGGATCTTGGCTCC 26765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/128 (74%), Gaps = 12/128 (9%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || || || || ||||| || || || |||||||| ||| | Sbjct 25586 AATCCATCCATCTCTGTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 25641 Query 11600 ATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||||||| |||| || ||| | || || |||||||||||||||||||||||| Sbjct 25642 --ACCACCAAGCCCGGCACCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACA 25699 Query 11654 ATACATGG 11661 || || || Sbjct 25700 ATGCAGGG 25707 >seq5229 Length=31845 Score = 120 bits (132), Expect = 4e-22 Identities = 218/320 (68%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || || || || ||||| || || || |||||||| ||| | Sbjct 26521 AATCCATCCATCTCTGTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCC---- 26576 Query 11600 ATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||||||| |||| || ||| | || || |||||||||||||||||||||||| Sbjct 26577 --ACCACCAAGCCCGGCACCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACA 26634 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || || || || | ||| | |||||||| || || || || |||||| ||| Sbjct 26635 ATGCAGGGCGCCTTGGCCTTGGCCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACA 26694 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCA 11773 || ||||| | ||| || || | | || | ||| || ||| || || | || Sbjct 26695 CCGACAAAGAGCTCGACGAACTCAGACGCGGCGCAGGAGAAGAACGGCACCCCGGCCTCT 26754 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || |||| ||| || |||||||| || || || || || || || |||| ||| | Sbjct 26755 CCGGCGACGGCACGCGCGAGGAGAGTTTTACCTGTCCCAGGTGGGCCGACGAGGAGGCAG 26814 Query 11834 CCTCGGGGGATCTTGGCACC 11853 || ||||||||||| || Sbjct 26815 CCCTTTGGGATCTTGGCTCC 26834 >seq1443 Length=121453 Score = 118 bits (130), Expect = 1e-21 Identities = 305/456 (67%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| |||||||| |||||||||||||| || | ||| ||| ||||| Sbjct 25381 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 25440 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGG-TGGCACCCCAACTTGTTTGAGGAGACG 122489 |||| ||||| || | |||| | || | | ||||| | |||| || || Sbjct 25441 CAGTCGAATGGGTTGGTGACGTTGTACATCTTCTTGTGCCCCAG-TGCCATGAGCAGGCG 25499 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | || |||| ||||||| | ||| | | |||||| |||| ||| || Sbjct 25500 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCA 25559 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 |||||| ||||| ||| |||| | ||| || || || || || ||||| || | Sbjct 25560 TGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG 25619 Query 122610 GATAGTTTCGGTAGTGGGTCTA---TTACGCAAAG----TCTT-GAAGAGCTCCACGGCA 122661 || ||| | | | || | | ||| || || | || ||| || ||| Sbjct 25620 GACG----CGGGACTCG-TCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCG 25671 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || |||||| ||||| || ||||| || || || || |||||| || || ||| Sbjct 25672 AAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 25731 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 ||||| || |||||||| | ||| | || |||||||| || || ||||||||||| ||| Sbjct 25732 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 25791 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || || || || | ||||| ||||||||| Sbjct 25792 TCGACGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 25827 >seq3634 Length=55208 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 548 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 607 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 608 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 667 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 668 GGCGAAGGCGACTAGGCGCTCGGCGAAG 695 >seq2924 Length=71133 Score = 114 bits (126), Expect = 2e-20 Identities = 197/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | ||| ||| | ||| || | | |||||||| ||| Sbjct 66257 TCAAATCGTCCAGGTCTAAGCAAGGCTGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 66198 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || | | |||||| | Sbjct 66197 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTCAGA 66138 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTG------CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| || | | |||| | || Sbjct 66137 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCGGTTCCTCTTTGCCTTCCA 66084 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || || || || || || || ||| | | |||| Sbjct 66083 ACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGCCTTCTTAAAG 66024 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| ||||| ||||||||||||||||| Sbjct 66023 AGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAA 65977 Score = 113 bits (124), Expect = 6e-20 Identities = 168/239 (70%), Gaps = 12/239 (5%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 |||||||| |||||||| | || ||||| | ||||| ||||||||||| || | | Sbjct 65655 TTAGTGGCGGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAAT 65596 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTG------ 11614 | |||||| | || || || || ||||||||| | ||||||| || | Sbjct 65595 AGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCGGTTCCT 65542 Query 11615 CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 11674 | |||| | || || ||||| || ||||||| || || || || || || || | Sbjct 65541 CTTTGCCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTG 65482 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || | | ||||||||| ||||||| |||||| ||||| ||||||||||||||||| Sbjct 65481 GCCTTCTTAAAGAGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAA 65423 >seq3299 Length=62565 Score = 105 bits (116), Expect = 8e-18 Identities = 195/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | ||| ||| | ||| || | | |||||||| ||| Sbjct 1926 TCAAATCGTCCAGGTCTAAGCAAGGCTGAATCCAAGATGTCAGCTCTGTTAGTGGCAGCA 1985 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || | | |||||| | Sbjct 1986 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTCAGA 2045 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTG------CGTTGCTTGCCC 11626 || || || || ||||||||| | ||||||| || | | |||| | || Sbjct 2046 GTCTGCTCCCTTTCATCATTTCC------ACCACCAATACCGGTTCCTCTTTGCCTTCCA 2099 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| || ||||||| || || || || || || || ||| | | || Sbjct 2100 ACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGCCTTCTTGAAA 2159 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||||| |||||| ||||| ||||||||||||||||| Sbjct 2160 AGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAA 2206 >seq1932 Length=101031 Score = 96.9 bits (106), Expect = 4e-15 Identities = 302/458 (66%), Gaps = 11/458 (2%) Strand=Plus/Minus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 |||| |||||||| | || || | ||| | || | ||| ||||| || | || Sbjct 76153 ATCTGACGATCAAATCTTCCTGGTCTAAGCAAAGCCTTATCTAGGATGTCAGGTCTGTTG 76094 Query 11504 GTGGCCGCAATAACCACAATGCCAG-TCTCATTGTCAAAGCCATCCATCTCGGTGAGTAA 11562 || | |||| ||| |||| |||| | | || |||| ||||||||||| || || Sbjct 76093 GTACCAGCAAGAACAACAACTCCAGATGTTGTTC-CAAATCCATCCATCTCTACCAGCAA 76035 Query 11563 TTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA-CCAGCACTGCG--TTG 11619 || || | ||| ||| | |||||||| | | || | | || ||| || ||| Sbjct 76034 CTGGTTCAATGTGCTTTCACGCTCATCATGTCCAC-CAGAAAATCCCCCACGGCCCCTTG 75976 Query 11620 CTTGCCCACC-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 11678 | | ||| |||||||||||||||||||||||||||| ||| | || || || Sbjct 75975 CACGACCAATAGCATCAATCTCATCAATGAAGACAATACTAGGTGCACATTGTCGAGCTT 75916 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 || ||| | || ||||| | || |||||||| |||||||||| |||| || Sbjct 75915 CTTGAAATAAGCTTCGCACCCTGGATGGTCCAACACCAACGAACATCTCCATGAAGTCTG 75856 Query 11739 CGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 |||| | | | | ||| || |||| || || || ||| | ||| ||||||||| Sbjct 75855 AACCAGA--AATAGACAAGAAGGGCACATCAGACTCTCCTGCGGTAGCTTTGGCGAGGAG 75798 Query 11797 GGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACT 11856 || |||||||| || || ||| | ||||| || || || || || || ||| Sbjct 75797 CGTTTTTCCCGTGCCAGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTAGCTCCAAG 75738 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 | | |||| ||| ||| | || ||||||| ||||| Sbjct 75737 TTCTTCATATTTCTTGGGATTTTTCAGAAAATGCACAA 75700 >seq6216 Length=21153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 300/458 (66%), Gaps = 11/458 (2%) Strand=Plus/Minus Query 11444 ATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTA 11503 |||| |||||||| | || || | ||| | || | ||| ||||| || | || Sbjct 11639 ATCTGACGATCAAATCTTCCTGGTCTAAGCAAAGCCTTATCTAGGATGTCAGGTCTGTTG 11580 Query 11504 GTGGCCGCAATAACCACAATGCCAG-TCTCATTGTCAAAGCCATCCATCTCGGTGAGTAA 11562 || | |||| ||| |||| |||| | | || |||| ||||||||||| || || Sbjct 11579 GTACCAGCAAGAACAACAACTCCAGATGTTGTTC-CAAATCCATCCATCTCTACCAGCAA 11521 Query 11563 TTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA-CCAGCACTGCG--TTG 11619 || || | ||| ||| | |||||||| | | || | | || ||| || ||| Sbjct 11520 CTGGTTCAATGTGCTTTCGCGCTCATCATGTCCAC-CAGAAAATCCCCCACGGCCCCTTG 11462 Query 11620 CTTGCCCACC-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 11678 | | ||| |||||||||||||||||||| ||||||| ||| | || || || Sbjct 11461 CACGGCCAATAGCATCAATCTCATCAATGAATACAATACTAGGTGCACATTGTCGAGCTT 11402 Query 11679 TTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG 11738 || ||| | || ||||| | || |||||||| |||||||||| |||| || Sbjct 11401 CTTGAAATAAGCTTCGCACCCTGGATGGTCCAACACCAACGAACATCTCCATGAAGTCTG 11342 Query 11739 CGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 |||| | | | | ||| || |||| || || || ||| | ||| ||||||||| Sbjct 11341 AACCAGA--AATAGACAAGAAGGGCACATCAGACTCTCCTGCGGTAGCTTTGGCGAGGAG 11284 Query 11797 GGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACT 11856 || |||||||| || || ||| | ||||| || || || || || || ||| Sbjct 11283 CGTTTTTCCCGTGCCAGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTAGCTCCAAG 11224 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 | | |||| ||| ||| | || ||||| | ||||| Sbjct 11223 TTCTTCATATTTCTTGGGATTTTTCAGAAAGTGCACAA 11186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627923012896800