Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1443 156 5e-33 seq3634 147 3e-30 seq5229 100 4e-16 seq4632 100 4e-16 seq3199 95.1 1e-14 seq2924 93.3 5e-14 seq3299 84.2 3e-11 >seq1443 Length=121453 Score = 156 bits (172), Expect = 5e-33 Identities = 314/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 25381 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 25440 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || |||||||| | ||| | || | || | | ||| | | ||| || || Sbjct 25441 CAGTCGAATGGGTTGGTGACGTTGTACATCTTCTTGTGCCCCAGTGCCAT-GAGCAGGCG 25499 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| | || |||||| |||| ||| || Sbjct 25500 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCA 25559 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 |||||||||||| ||| |||| | ||| ||||| || || || ||||| || | Sbjct 25560 TGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG 25619 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | ||| || | || | | ||| | | ||| | || ||| || ||| || Sbjct 25620 GACGCGGGACTC-GT-CGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 25673 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || |||||| |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 25674 GTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 25733 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 25734 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 25793 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | || ||||| || ||| Sbjct 25794 GACGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 25827 >seq3634 Length=55208 Score = 147 bits (162), Expect = 3e-30 Identities = 312/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 249 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATTAGCTCCATC 308 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || |||||||| ||| | || | || | ||| | |||| || || Sbjct 309 CAGTCGAATGGGTTGGCGACGTTGTACATCTTCTTGTGGCCCAG-CGCCATGAGCAGGCG 367 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| ||||||| ||| | || |||||| |||| ||| || Sbjct 368 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCA 427 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 |||||||||||| ||| |||| | ||| ||||| || || || ||||| || | Sbjct 428 TGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG 487 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | ||| || | || | | ||| | | ||| | || ||| || ||| || Sbjct 488 GACGCGGGACTC-GT-CGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 541 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || |||||| |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 542 GTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 601 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 602 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 661 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | || ||||| || ||| Sbjct 662 GACGCAGGCGAAGGCGACTAGGCGCTCGGCGAAG 695 >seq5229 Length=31845 Score = 100 bits (110), Expect = 4e-16 Identities = 277/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 || |||| || ||||| || | ||||| ||||| || || ||| |||| ||| Sbjct 26419 ACTGTGACCTGCCGATCGAACCTTCCTGGCCGGAGAAGTGCAGAGTCCAGGACATCGGGC 26478 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 14167 | ||| ||||| || | || | || || | |||| || || ||||||||||| Sbjct 26479 CTGTTTGTCGCGGCAAGCACGATGACACCACT---GTTACCAGCGAATCCATCCATCTCT 26535 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCA 14224 |||| | || || ||||| || || | ||||| || || |||| || ||| Sbjct 26536 GTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCACC---ACCAAGCCCGGCA 26592 Query 14225 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284 | || ||| | || || || ||||| ||||| ||||| || || || || || | Sbjct 26593 CCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCC 26652 Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344 ||| ||||||| || |||||||| |||||||||||| ||||| | ||| || Sbjct 26653 TTGGCCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACG 26712 Query 14345 AAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCG 14404 || | | |||| || || ||| || || | || || |||| ||| || ||| Sbjct 26713 AACTCAGACGCGGCGCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCG 26772 Query 14405 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCA 14464 ||||| || || || ||||| ||| || |||| ||| || ||||||| |||| Sbjct 26773 AGGAGAGTTTTACCTGTCCCAGGTGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCT 26832 Query 14465 CC 14466 || Sbjct 26833 CC 26834 >seq4632 Length=39362 Score = 100 bits (110), Expect = 4e-16 Identities = 277/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | ||||| ||||| ||||| ||| || | |||| Sbjct 26350 ACGGTGACCTGCCGATCGAACCTTCCTGGACGGAGAAGGGCAGAGTCCAGAACATCAGGC 26409 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCA---AAGCCATCCATCTCA 14167 | ||| ||||| || | || | || || | |||| || || ||||||||||| Sbjct 26410 CTGTTTGTCGCGGCAAGCACGATGACACCACT---GTTACCAGCGAATCCATCCATCTCT 26466 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCA 14224 |||| | || || ||||| || || | ||||| || || |||| || ||| Sbjct 26467 GTCAGCAACTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCACC---ACCAAGCCCGGCA 26523 Query 14225 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284 | || ||| | || || || ||||| ||||| ||||| || || || || || | Sbjct 26524 CCACGCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCC 26583 Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344 ||| ||||||| || |||||||| |||||||||||| ||||| | ||| || Sbjct 26584 TTGGCCTTCTCAAAGAGGTCACGCACTCTGGAGGCACCGACACCGACAAAGAGCTCGACG 26643 Query 14345 AAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCG 14404 || | | || | || || ||| || || | || || |||| ||| || ||| Sbjct 26644 AACTCTGACGCAGCGCAGGAGAAGAACGGCACCCCGGCCTCTCCGGCGACGGCACGCGCG 26703 Query 14405 AGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCA 14464 ||||| || || || ||||| || || |||| ||| || ||||||| |||| Sbjct 26704 AGGAGAGTTTTACCTGTCCCAGGCGGGCCGACGAGGAGGCAGCCCTTTGGGATCTTGGCT 26763 Query 14465 CC 14466 || Sbjct 26764 CC 26765 >seq3199 Length=64821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 293/446 (66%), Gaps = 8/446 (2%) Strand=Plus/Plus Query 13986 CCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGT 14044 ||| |||||||| | | || ||| || | | |||| ||| || || ||||| ||| Sbjct 33851 CCAGCTTCTTGT-TGGCGCAGTGCACCCTGAGGATCTCCTCCCGTCCCCGCACGTCGGGA 33909 Query 14045 AGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATA 14104 || |||| || || ||||| || | || || ||||| || || |||| ||||| Sbjct 33910 AGCCCGACGGCGACCTGCCGATCGAACCTCCCGGGCCGGAGAAGCGCCGCGTCGAGGATG 33969 Query 14105 TCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATC 14164 || ||||| || || |||||||| | || ||| | ||| | || || |||||| Sbjct 33970 TCGGGCCGGTTGGTTGCTGCGATGACGATGACGCCGCTGTCGCCGGCGAACCCGTCCATC 34029 Query 14165 TCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCG 14222 || || | || || |||| || || || || || || ||| | || | | |||| Sbjct 34030 TCCGTGAGCAGCTGGTTGAGCGTCTGCTCCCGCTCGTCGTTCCC--GCCGCCGATGCCCG 34087 Query 14223 CACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTT 14282 | | ||| ||| ||||||||||| || || |||| ||| |||| || || Sbjct 34088 CGCCGCGCTGCCGTCCGACGGCGTCGATCTCGTCGACGAACACGAGGCACGGCGCGGCGG 34147 Query 14283 CACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCA 14342 | ||| || |||| || ||||| | | || || || ||||| |||||||| | Sbjct 34148 CCTTGGCCCGGTCGAAGAGGTCCCGCACCCGCGACGCGCCCACTCCCACGAACATCTCGA 34207 Query 14343 CAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGG 14401 || | || ||| ||| | || |||||| || | ||| |||||||| || | Sbjct 34208 TGAACTCGGACCCGG-ACAGCGAGAAGAAGGGCACCCCGGCTTCCCCCGCGATCGCCTTG 34266 Query 14402 GCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || ||||||||||| || || Sbjct 34267 GCCAGCAGCGTCTTCCCCGTGCCCGG 34292 >seq2924 Length=71133 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || || |||| ||| || || | ||||| ||||||||||||||||| Sbjct 65656 GTTAGTGGCGGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAA 65597 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTG 14232 |||||||| | || || || | ||||||||| || | ||| | | | ||| Sbjct 65596 TAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCGGTTCCTCTTTG 65537 Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAAC 14292 | | || || || || |||||||| | || || || || || || || ||| | Sbjct 65536 CCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGC--C 65479 Query 14293 TTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTG 14350 ||| ||||| ||| || || | |||||| ||||| ||||||||||||||||| | Sbjct 65478 TTCTTAAAGAGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCA 65419 Query 14351 GCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 | ||| | |||| || ||| || || || ||| || || || || ||| || | Sbjct 65418 GATCCGG-ATATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAA 65360 Query 14410 GGTCTTCCCCGTCCCTGG 14427 ||||| || || || || Sbjct 65359 AGTCTTACCAGTTCCAGG 65342 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/318 (67%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || || |||| ||| || || | ||||| ||||||||||||||||| Sbjct 66210 GTTAGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAA 66151 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTG 14232 |||||||| | || || || | ||||||||| || | ||| | | | ||| Sbjct 66150 AAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCGGTTCCTCTTTG 66091 Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAAC 14292 | | || || || || |||||||| | || || || || || || || ||| | Sbjct 66090 CCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGC--C 66033 Query 14293 TTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTG 14350 ||| ||||| ||| || || | |||||| ||||| ||||||||||||||||| | Sbjct 66032 TTCTTAAAGAGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCA 65973 Query 14351 GCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 | ||| | |||| || ||| || || || ||| || || || || ||| || | Sbjct 65972 GATCCGG-ATATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAA 65914 Query 14410 GGTCTTCCCCGTCCCTGG 14427 ||||| || || || || Sbjct 65913 AGTCTTACCAGTTCCAGG 65896 >seq3299 Length=62565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 212/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 14113 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 14172 ||| || || || || |||| ||| || || | ||||| ||||||||||||||||| Sbjct 1973 GTTAGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAA 2032 Query 14173 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTG 14232 |||||||| | || || || | ||||||||| || | ||| | | | ||| Sbjct 2033 AAGTTGATTCAGAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCGGTTCCTCTTTG 2092 Query 14233 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC-ATGGTTGATTTTCACGGGCAA 14291 | | || || || || |||||||| | || || || | | || | | | | || | Sbjct 2093 CCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGGGCGTTCTCCTTGGCCTT 2152 Query 14292 CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG 14351 ||| ||| | ||| || || | |||||| ||||| ||||||||||||||||| | | Sbjct 2153 CTTGAAA-AGATCACGAACCCGGGAGGCACCAACACCGACAAACATCTCCACAAACTCAG 2211 Query 14352 CGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGG 14410 | ||| |||| || ||| || || || ||| || || || || ||| || | Sbjct 2212 ATCCCGAA-ATTGAGAAGAAAGGCACACCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAA 2270 Query 14411 GTCTTCCCCGTCCCTGG 14427 ||||| || || || || Sbjct 2271 GTCTTACCAGTTCCAGG 2287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618327878301480